Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20variabilis_20[refseq_20GCF_5F000147415.1_202010-09-16] 414 sequences; 46,159,512 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq12 185 2e-41 seq8 107 4e-18 >seq12 Length=1469606 Score = 185 bits (204), Expect = 2e-41 Identities = 248/345 (72%), Gaps = 0/345 (0%) Strand=Plus/Minus Query 333643 CCTCGAGGAACCCGGGCTCGGGGAACTTCCACGTGGTCTTCGTCTCGGTAAGGGCGTAGT 333702 |||| ||||| ||||||||||| | |||| |||| | |||| |||| ||||| Sbjct 587646 CCTCCAGGAAGCCGGGCTCGGGCAGGGACCACTTGGTGGAGGCGTCGGCCAGGGAGTAGT 587587 Query 333703 AACTCGCTGATTCGGGACGCTTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCA 333762 | || | ||||| |||| || ||| |||| |||||| || ||| ||||||||| | Sbjct 587586 AGGCGGCGGCCTCGGGGCGCTGCTGCACAAACTTGGACAGGTTGCCCAGGTACTTCTTGA 587527 Query 333763 GCTTTAGGTTAGGTTCGTAATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGT 333822 |||| | ||| ||||| ||||| || |||| ||| || ||||| ||||| || |||| Sbjct 587526 GCTTGAAGTTGTCCTCGTAGTGGATGATGGAGGAGCAGACGGCGTCCAGGAAGCCCGAGT 587467 Query 333823 CGTGTGACACAATCACGCACGAAACGTCCTTAAGGTTGATCAGGTATTCAATCAGCCACC 333882 |||| || || | ||| | | ||| |||| ||| | |||||| | ||||||||| Sbjct 587466 CGTGGGAGACGACCACCGAGGTGACGCCCTTGAGGCCCACCAGGTAGTTGATCAGCCACT 587407 Query 333883 TCACGTTAGACACAGAAAGATGGTTGGTCGGCTCGTCAAGAAGTAGTAGCTTTGCGTTCA 333942 |||||| | ||| ||||||||||| ||||| || || || | | | ||||||| Sbjct 587406 GCACGTTGGTCACGTCCAGATGGTTGGTGGGCTCATCCAGCAGCATGATGTCGGCGTTCA 587347 Query 333943 GGAGCATTGCACGTGCAAGAGCGAGTTTCATTTTCCACCCTCCTG 333987 |||||| || || || || || || ||||| ||||| || |||| Sbjct 587346 TGAGCATGGCCCGCGCCAGGGCCAGCTTCATCTTCCAGCCGCCTG 587302 Score = 134 bits (148), Expect = 3e-26 Identities = 159/213 (75%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 334725 TTCGCCATGTTCCGGATGATAACACACGTCTTACGCCGAACGGGGGTGGTGCGATCGGCA 334784 || |||||||| |||||||| || |||| ||| || || | ||| |||||||| |||| Sbjct 585468 TTGGCCATGTTGCGGATGATGACGCACGCCTTGCGGCGGATGGGCGTGGTGCGGTCGGTC 585409 Query 334785 AGCCCGCGGACGAGTAGCGGGGTCAGGATAGACAGGGTCTTCGCGTCGACCGACTGGACG 334844 || ||||| ||||| || || |||||| ||||| || |||||| ||||||||||| Sbjct 585408 AGGCCGCGCACGAGCAGGGGCACCAGGATGGACAGAGTGCGCGCGTCCACCGACTGGACA 585349 Query 334845 AACGTGGTCGCAGATAGGTTGTGGACACACTCGGGGACGTC-CTGAGGAGAACCAATGCT 334903 |||||||| ||||| || ||||| || || ||||| || || ||| || | || |||| Sbjct 585348 AACGTGGTGGCAGAGAGCTTGTGCACGCAGTCGGGCACCTCGCTG-GGGGCGCCGATGCA 585290 Query 334904 CTTCACAAGATGGGGAATGAAGGGTTCGATGTC 334936 | || ||||| | ||||| || ||||| Sbjct 585289 GCGGATCAGGTGGGGCACAAAGGGCTCAATGTC 585257 Score = 114 bits (126), Expect = 3e-20 Identities = 99/123 (80%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 333320 GTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGATGATC 333379 ||| || |||| |||||| ||||| ||||| ||||||||||| |||||||| || || | Sbjct 588314 GTCCTCGCCGGTGGCATAGCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTT 588255 Query 333380 CTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCA 333439 ||| ||||||||||| || ||||| |||||||| || | |||| || || |||||||| Sbjct 588254 CTCAATGTGGTGGAAGGCGTGCTGCGCCACGTAGGCGACGCGCAGGTTGGGGTGCTTCCA 588195 Query 333440 AAC 333442 || Sbjct 588194 CAC 588192 >seq8 Length=1782911 Score = 107 bits (118), Expect = 4e-18 Identities = 75/84 (89%), Gaps = 1/84 (1%) Strand=Plus/Minus Query 172707 CGATCCCTTAGCTCAGTTGGAAGAGTTTTTGCCTAACACGCAGAAGGTCGCAGGATCGAA 172766 ||||||||||||||||| ||||||| | ||| |||||||||||||||||||||||| || Sbjct 298479 CGATCCCTTAGCTCAGT-GGAAGAGCATCTGCTTAACACGCAGAAGGTCGCAGGATCAAA 298421 Query 172767 ACCTGCAGGGATCACATTTTGTAT 172790 |||||||||||||| ||||| || Sbjct 298420 GCCTGCAGGGATCACGTTTTGGAT 298397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102874149910900