Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20variabilis_20[refseq_20GCF_5F000147415.1_202010-09-16] 414 sequences; 46,159,512 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq3 127 2e-24 seq20 109 7e-19 seq26 86.0 7e-12 >seq3 Length=2414369 Score = 127 bits (140), Expect = 2e-24 Identities = 120/153 (78%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 126046 GGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCC 126105 |||||| || ||| || |||||||| || ||||||||||| || |||||| || || Sbjct 915899 GGCAAAGTCGGTGTGCAGTCCCTCGTCGCGCGAGATGAGTTCGTTGGAGAAGGTGAGGCC 915958 Query 126106 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGAT 126165 |||||||| || |||||||| | |||||| || | || || || || ||||||||||| Sbjct 915959 GGGCATGAGTCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCGGAGAAGAAGAT 916018 Query 126166 TCCCTCCACACACGCGAACGCAAAGAGACGCTC 126198 |||||||| ||||| ||||||| || ||||| Sbjct 916019 GCCCTCCACGCACGCAAACGCAATCAGGCGCTC 916051 >seq20 Length=953202 Score = 109 bits (120), Expect = 7e-19 Identities = 126/168 (75%), Gaps = 5/168 (3%) Strand=Plus/Minus Query 126104 CCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAG 126163 || |||||||| |||||||||| |||||| || | || || || || |||||| | Sbjct 640333 CCCGGCATGAGCTGGCGCTTCTTCAGCCAGAAGATGGAGCAGAAGGAGCCTGAGAAGTGG 640274 Query 126164 ATTCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGC-GCGACTTTGTGTC 126222 || |||||||| ||||| | || | || ||||| |||||| ||| || ||| | | || Sbjct 640273 ATACCCTCCACGCACGCATATGCCACCAGCCGCTCTGCAAAGCAGCTGCTACTCTCTATC 640214 Query 126223 AAACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGT 126270 ||||||||||||||||||||||| |||| || || |||| ||| Sbjct 640213 ----CACTTCATCGCCCACTGCGCCTTCTTCTGGACGCAGGGGATGGT 640170 >seq26 Length=676052 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 113941 ATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGA 114000 |||||| |||| ||||||||||| |||||||| ||||| |||| ||| ||| |||| Sbjct 477048 ATAGATGTTGGAGGTGTATGGCTCGAAGCACTCGTTGTTGCCCAGGATCTGGCTGGTGCT 477107 Query 114001 GGCTGTGGGCATGGGTGCCA 114020 ||| |||||||||||||||| Sbjct 477108 GGCGGTGGGCATGGGTGCCA 477127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597350508695120