Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20variabilis_20[refseq_20GCF_5F000147415.1_202010-09-16] 414 sequences; 46,159,512 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq26 105 7e-18 >seq26 Length=676052 Score = 105 bits (116), Expect = 7e-18 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 93979 GGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCAAAATACGCGGGGGGAATCGGG 94038 || || | ||||| |||||||| || || | |||||| || | ||| || || ||||| Sbjct 479506 GGCATCTACGACACGCTCAAGGAGTGCGCCAGCATCTCCAAGTCCGCCGGCGGCATCGGC 479447 Query 94039 ATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATCCGCGGTACCAATGGCACCTCC 94098 | | ||| || | || |||| || |||||||||||||| ||||| |||||| | Sbjct 479446 CTGTCCATGCACAACATCCGCGCCACCGGCTCCTACATCCGCGGCACCAACGGCACCAGC 479387 Query 94099 AACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAAC 94134 |||||| |||| || ||||| |||||||||||| || Sbjct 479386 AACGGCATCGTGCCCATGCTGCGGGTCTTCAACGAC 479351 Score = 95.1 bits (104), Expect = 1e-14 Identities = 173/251 (69%), Gaps = 2/251 (1%) Strand=Plus/Minus Query 94333 TGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGACGTTTGTGGATCGCGTTTT 94392 ||||| || || || ||||| || | ||||| ||| ||||| || || | ||| Sbjct 478698 TGGAGCCTGTTCTGCCCCAACGAGTCCCCCGGCCTGGCCGACTGCTGGGGCGAGGAGTTT 478639 Query 94393 GAAGACTTGTATGCTCGTTACGAATCGC-AGGGCAAGGCCAGGAAGGTTATGGATGCTAG 94451 || | | || | || ||||| ||| |||| ||| | ||||| || | || Sbjct 478638 GAGGCGCTCTACTCGCGGTACGAG-CGCGAGGGGCGCGCCCGCAAGGTCATCAAGGCGCA 478580 Query 94452 GAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGGTACGCCCTACATCTTGTT 94511 | |||||||| | ||| |||| | |||||||||||||| | || | ||| ||| Sbjct 478579 GCAGCTGTGGTTTGCCATCCTGGAGGCGCAGGTGGAGACGGGCAACCCGTTCATGCTGTA 478520 Query 94512 CAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGGGGTGATCAAGAGCTCGAA 94571 ||||||||| | |||| |||||||||||||||| |||| || |||||| || || Sbjct 478519 CAAGGACTCCGCCAACCGCAAGTCCAACCAGCAGAACCTGGGCACCATCAAGTCGTCCAA 478460 Query 94572 TCTGTGCACCG 94582 |||||||||| Sbjct 478459 CCTGTGCACCG 478449 Score = 91.5 bits (100), Expect = 1e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 95078 ACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCC 95137 |||||||| ||| ||||||| ||||| ||||||||||| ||| ||| ||||||| Sbjct 477151 ACGGTGTGCGCAACTCGCTGCTGGTGGCACCCATGCCCACCGCCAGCACCAGCCAGATCC 477092 Query 95138 TTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAAC 95175 | ||||||||||||| ||||| || | |||||||||| Sbjct 477091 TGGGCAACAACGAGTGCTTCGAGCCATACACCTCCAAC 477054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494720639807440