Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20variabilis_20[refseq_20GCF_5F000147415.1_202010-09-16] 414 sequences; 46,159,512 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq3 87.8 2e-12 >seq3 Length=2414369 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 52395 GAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCC 52454 |||||| || | || || || || |||||| | || || |||||| ||| | || Sbjct 916051 GAGCGCCTGATTGCGTTTGCGTGCGTGGAGGGCATCTTCTTCTCCGGCTCCTTCTGCTCC 915992 Query 52455 ATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATA 52514 ||||| | | || | | || | ||||||||||| || ||| |||||| | || Sbjct 915991 ATCTTCTGGCTCAAGAAGCGCGGACTCATGCCCGGCCTCACCTTCTCCAACGAACTCATC 915932 Query 52515 TCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCT 52552 ||||||||||| ||||||||||| |||||||| ||||| Sbjct 915931 TCGCGCGACGAGGGACTGCACACCGACTTTGCCTGCCT 915894 Score = 82.4 bits (90), Expect = 8e-11 Identities = 97/130 (75%), Gaps = 1/130 (1%) Strand=Plus/Minus Query 52615 AGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCA 52674 ||||||||| || || |||||||| | | ||||||||| || || || | |||| Sbjct 915615 AGGCGGTGGAGATTGAGAAGGAGTTCATCTGCGACGCGCTGCCCGTGGACCTCATCGGCA 915556 Query 52675 TGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGC 52734 ||||| ||| |||| | ||||||||||||||||||| || || ||| ||||| || Sbjct 915555 TGAACTCGCGCCTCATGGGACAGTACATCGAGTTTGTGGCAGACCGCCTGCTGGTGGCGC 915496 Query 52735 TCGGGCAGCC 52744 | ||||| || Sbjct 915495 T-GGGCAACC 915487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496259831842080