Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20variabilis_20[refseq_20GCF_5F000147415.1_202010-09-16] 414 sequences; 46,159,512 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq3 131 2e-25 seq20 113 6e-20 seq26 89.7 6e-13 >seq3 Length=2414369 Score = 131 bits (144), Expect = 2e-25 Identities = 120/152 (79%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| || |||||||| || ||||||||||| || |||||| || || Sbjct 915900 GCAAAGTCGGTGTGCAGTCCCTCGTCGCGCGAGATGAGTTCGTTGGAGAAGGTGAGGCCG 915959 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 |||||||| || |||||||| | |||||| || | || || ||||| ||||||||||| Sbjct 915960 GGCATGAGTCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCGGAGAAGAAGATG 916019 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTC 127671 |||||||| ||||| ||||||| || ||||| Sbjct 916020 CCCTCCACGCACGCAAACGCAATCAGGCGCTC 916051 >seq20 Length=953202 Score = 113 bits (124), Expect = 6e-20 Identities = 128/170 (75%), Gaps = 5/170 (3%) Strand=Plus/Minus Query 127575 GACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGA 127634 |||| |||||||| |||||||||| |||||| || | || || ||||| |||||| Sbjct 640335 GACCCGGCATGAGCTGGCGCTTCTTCAGCCAGAAGATGGAGCAGAAGGAGCCTGAGAAGT 640276 Query 127635 AGATCCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGG-ACTTTGTA 127693 ||| |||||||| ||||| | || | || ||||| |||||| ||| | ||| | || Sbjct 640275 GGATACCCTCCACGCACGCATATGCCACCAGCCGCTCTGCAAAGCAGCTGCTACTCTCTA 640216 Query 127694 TCAAACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGT 127743 || ||||||||||||||||| ||||| |||| || || |||| ||| Sbjct 640215 TC----CACTTCATCGCCCACTGCGCCTTCTTCTGGACGCAGGGGATGGT 640170 >seq26 Length=676052 Score = 89.7 bits (98), Expect = 6e-13 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 115902 ATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGA 115961 ||||||||||| ||||||||||| |||||||| ||||| |||| ||| ||| ||| Sbjct 477048 ATAGATGTTGGAGGTGTATGGCTCGAAGCACTCGTTGTTGCCCAGGATCTGGCTGGTGCT 477107 Query 115962 GGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACC 116003 ||| |||||||||||||||| || || |||||| | ||| Sbjct 477108 GGCGGTGGGCATGGGTGCCACCAGCAGCGAGTTGCGCACACC 477149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613504025100240