Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20variabilis_20[refseq_20GCF_5F000147415.1_202010-09-16] 414 sequences; 46,159,512 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq3 125 1e-23 seq26 98.7 2e-15 >seq3 Length=2414369 Score = 125 bits (138), Expect = 1e-23 Identities = 135/175 (77%), Gaps = 3/175 (2%) Strand=Plus/Plus Query 159915 ACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACA 159974 |||| ||||| ||||||||| ||||||||||||||| || ||||||| |||||||| | Sbjct 915889 ACAGCAGGCAGGCAAAGTCGGTGTGCAGTCCCTCGTCGCGCGAGATGAGTTCGTTGGAGA 915948 Query 159975 TGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCA-CCG 160033 | ||||||| ||||||| || ||| |||||||| || |||| ||| ||| | ||| Sbjct 915949 AGGTGAGGCCGGGCATGAGTCCGCGCTTCTTGAGCCAGAAGATGG-AGCAGAAGGAGCCG 916007 Query 160034 CTAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGG 160088 || ||||| ||||||||| ||||||||| | || | ||| | | |||||| Sbjct 916008 GAGAAGAAGATGCCCTCCACGCACGCAAACGCAATCAGGCGCTC-CGAGAAGAGG 916061 >seq26 Length=676052 Score = 98.7 bits (108), Expect = 2e-15 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 204206 CCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTCGTTGTTG 204265 || |||||||| | ||| | | |||| |||| |||| ||||| |||||||||| Sbjct 477028 CCAGACAGCACGCGACGGACATAGATGTTGGAGGTGTATGGCTCGAAGCACTCGTTGTTG 477087 Query 204266 CCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTTGCGCACA 204325 || | ||||| ||||||||| ||||||||||| |||| ||||| |||||||||||| Sbjct 477088 CCCAGGATCTGGCTGGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGCGAGTTGCGCACA 477147 Query 204326 CCGT 204329 |||| Sbjct 477148 CCGT 477151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795151085071840