Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20variabilis_20[refseq_20GCF_5F000147415.1_202010-09-16] 414 sequences; 46,159,512 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq7 95.1 3e-14 seq4 95.1 3e-14 seq16 91.5 3e-13 seq13 91.5 3e-13 seq3 91.5 3e-13 >seq7 Length=1828856 Score = 95.1 bits (104), Expect = 3e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || ||||| || || |||||||| |||| |||||||||||||| || Sbjct 864769 CGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTG 864828 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 | ||||| || |||||||| || || ||||| || ||||||||||| || Sbjct 864829 CGGCCATCCTCAAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGG 864878 Score = 95.1 bits (104), Expect = 3e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || ||||| || || |||||||| |||| |||||||||||||| || Sbjct 865272 CGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTG 865331 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 | ||||| || |||||||| || || ||||| || ||||||||||| || Sbjct 865332 CGGCCATCCTCAAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGG 865381 Score = 95.1 bits (104), Expect = 3e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || ||||| || || |||||||| |||| |||||||||||||| || Sbjct 865775 CGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTG 865834 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 | ||||| || |||||||| || || ||||| || ||||||||||| || Sbjct 865835 CGGCCATCCTCAAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGG 865884 Score = 95.1 bits (104), Expect = 3e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || ||||| || || |||||||| |||| |||||||||||||| || Sbjct 866278 CGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTG 866337 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 | ||||| || |||||||| || || ||||| || ||||||||||| || Sbjct 866338 CGGCCATCCTCAAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGG 866387 Score = 95.1 bits (104), Expect = 3e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || ||||| || || |||||||| |||| |||||||||||||| || Sbjct 870773 CGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTG 870832 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 | ||||| || |||||||| || || ||||| || ||||||||||| || Sbjct 870833 CGGCCATCCTCAAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGG 870882 Score = 95.1 bits (104), Expect = 3e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || ||||| || || |||||||| |||| |||||||||||||| || Sbjct 871276 CGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTG 871335 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 | ||||| || |||||||| || || ||||| || ||||||||||| || Sbjct 871336 CGGCCATCCTCAAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGG 871385 Score = 95.1 bits (104), Expect = 3e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || ||||| || || |||||||| |||| |||||||||||||| || Sbjct 871779 CGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTG 871838 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 | ||||| || |||||||| || || ||||| || ||||||||||| || Sbjct 871839 CGGCCATCCTCAAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGG 871888 >seq4 Length=2291561 Score = 95.1 bits (104), Expect = 3e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || ||||| || || |||||||| |||| ||||||||| |||| || Sbjct 1795767 CGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTG 1795826 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 | || || ||||||||||| || |||||||| || ||||||||||| || Sbjct 1795827 CGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGG 1795876 >seq16 Length=1197677 Score = 91.5 bits (100), Expect = 3e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || ||||| || || |||||||| |||| ||||||||| |||| || Sbjct 458204 CGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTG 458145 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 ||||| ||||||||||| || || ||||| || ||||||||||| || Sbjct 458144 TGGCCATCCTCCAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGG 458095 >seq13 Length=1343205 Score = 91.5 bits (100), Expect = 3e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || ||||| || || |||||||| |||| ||||||||| |||| || Sbjct 880618 CGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTG 880677 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 | ||||| ||||||||||| || || || || || ||||||||||| || Sbjct 880678 CGGCCATCCTCCAGCTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCGGG 880727 >seq3 Length=2414369 Score = 91.5 bits (100), Expect = 3e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || ||||| || || |||||||| |||| ||||||||| |||| || Sbjct 739747 CGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTG 739688 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 | ||||| ||||||||||| || || |||| || ||||||||||| || Sbjct 739687 CGGCCATCCTCCAGCTGCTTGCCCGCAAAGACCAGGCGCTGCTGGTCAGG 739638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178915346557738