Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20variabilis_20[refseq_20GCF_5F000147415.1_202010-09-16] 414 sequences; 46,159,512 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq3 123 2e-23 seq13 113 5e-20 seq4 109 5e-19 seq7 104 2e-17 seq16 96.9 3e-15 >seq3 Length=2414369 Score = 123 bits (136), Expect = 2e-23 Identities = 127/166 (77%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 132884 TGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGC 132943 || ||| || ||| ||||||||| |||| |||||||| | || |||||||||||| Sbjct 915886 TGTACAGCAGGCAGGCAAAGTCGGTGTGCAGTCCCTCGTCGCGCGAGATGAGTTCGTTGG 915945 Query 132944 TGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGC 133003 ||| || | |||||||||||| ||||| || |||||||| || |||| | ||| || Sbjct 915946 AGAAGGTGAGGCCGGGCATGAGTCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGC 916005 Query 133004 CCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTC 133049 | || ||||||| |||||| ||| ||| || || | ||||||||| Sbjct 916006 CGGAGAAGAAGATGCCCTCCACGCACGCAAACGCAATCAGGCGCTC 916051 Score = 104 bits (114), Expect = 2e-17 Identities = 106/136 (78%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 38337 GACAAAGAGGGAATTCCCGCC-GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGA 38395 ||||| ||||| || |||||| ||||| ||||| || | | |||||||| |||||||| Sbjct 739620 GACAAGGAGGGCAT-CCCGCCTGACCAGCAGCGCCTGGTCTTTGCGGGCAAGCAGCTGGA 739678 Query 38396 CGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 || | |||||||| ||||||||||||||| ||||| | || ||||| ||||||| Sbjct 739679 GGATGGCCGCACCCTGGCCGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTGCT 739738 Query 38456 GCGTTTGAGAGGCGGC 38471 ||| || | |||||| Sbjct 739739 GCGCCTGCGCGGCGGC 739754 Score = 96.9 bits (106), Expect = 3e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 133251 CACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGC 133310 ||||||||| || || ||| ||| | |||| || ||||||||||||||||| ||| Sbjct 916649 CACCTGCACCTCCTGCATGAAGCGCGCCCCCAGGTTCTCGTTGACGATGCCGTCAGAGGC 916708 Query 133311 GGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCA 133370 |||||| ||||| || ||||| | || |||||||||| |||| ||| |||||||| Sbjct 916709 GGCGAAGAAGGCGAGGACGTGTGACACAAAGTGGCGCTCGTCGTCGCTCAGCCGCTCCCA 916768 Query 133371 GTC 133373 ||| Sbjct 916769 GTC 916771 >seq13 Length=1343205 Score = 113 bits (124), Expect = 5e-20 Identities = 106/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| ||||| || || ||||||| ||||| || |||| |||||||| |||||||| Sbjct 880745 GACAAGGAGGGGATCCCGCCCGACCAGCAGCGCCTGATTTTTGCGGGCAAGCAGCTGGAG 880686 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 || | |||||||| ||||||||||||||| ||||| | || ||||| |||||||| Sbjct 880685 GATGGCCGCACCCTGGCCGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTGCTG 880626 Query 38457 CGTTTGAGAGGCGGC 38471 || || | |||||| Sbjct 880625 CGCCTGCGCGGCGGC 880611 >seq4 Length=2291561 Score = 109 bits (120), Expect = 5e-19 Identities = 98/122 (80%), Gaps = 1/122 (1%) Strand=Plus/Minus Query 38351 TCCCGCC-GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCC 38409 ||||||| ||||| ||||| || || | ||||||||| |||||||| |||| ||||||| Sbjct 1795881 TCCCGCCCGACCAGCAGCGCCTGATCTTCGCGGGCAAGCAGCTGGAGGACGGCCGCACCC 1795822 Query 38410 TCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCG 38469 | ||||||||||||||| ||||| | || ||||| |||||||||| || | |||| Sbjct 1795821 TGGCCGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTGCGCGGCG 1795762 Query 38470 GC 38471 || Sbjct 1795761 GC 1795760 >seq7 Length=1828856 Score = 104 bits (114), Expect = 2e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| ||||| || ||| ||||||| ||||| || || | |||||||| ||||| || Sbjct 864896 GACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATCTTTGCGGGCAAGCAGCTTGAG 864837 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 || | |||||||| |||||||||||||| ||||| | || ||||| |||||||| Sbjct 864836 GATGGCCGCACCCTGGCTGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTGCTG 864777 Query 38457 CGTTTGAGAGGCGGC 38471 || || | |||||| Sbjct 864776 CGCCTGCGCGGCGGC 864762 Score = 104 bits (114), Expect = 2e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| ||||| || ||| ||||||| ||||| || || | |||||||| ||||| || Sbjct 865399 GACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATCTTTGCGGGCAAGCAGCTTGAG 865340 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 || | |||||||| |||||||||||||| ||||| | || ||||| |||||||| Sbjct 865339 GATGGCCGCACCCTGGCTGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTGCTG 865280 Query 38457 CGTTTGAGAGGCGGC 38471 || || | |||||| Sbjct 865279 CGCCTGCGCGGCGGC 865265 Score = 104 bits (114), Expect = 2e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| ||||| || ||| ||||||| ||||| || || | |||||||| ||||| || Sbjct 865902 GACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATCTTTGCGGGCAAGCAGCTTGAG 865843 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 || | |||||||| |||||||||||||| ||||| | || ||||| |||||||| Sbjct 865842 GATGGCCGCACCCTGGCTGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTGCTG 865783 Query 38457 CGTTTGAGAGGCGGC 38471 || || | |||||| Sbjct 865782 CGCCTGCGCGGCGGC 865768 Score = 104 bits (114), Expect = 2e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| ||||| || ||| ||||||| ||||| || || | |||||||| ||||| || Sbjct 870900 GACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATCTTTGCGGGCAAGCAGCTTGAG 870841 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 || | |||||||| |||||||||||||| ||||| | || ||||| |||||||| Sbjct 870840 GATGGCCGCACCCTGGCTGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTGCTG 870781 Query 38457 CGTTTGAGAGGCGGC 38471 || || | |||||| Sbjct 870780 CGCCTGCGCGGCGGC 870766 Score = 104 bits (114), Expect = 2e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| ||||| || ||| ||||||| ||||| || || | |||||||| ||||| || Sbjct 871403 GACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATCTTTGCGGGCAAGCAGCTTGAG 871344 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 || | |||||||| |||||||||||||| ||||| | || ||||| |||||||| Sbjct 871343 GATGGCCGCACCCTGGCTGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTGCTG 871284 Query 38457 CGTTTGAGAGGCGGC 38471 || || | |||||| Sbjct 871283 CGCCTGCGCGGCGGC 871269 Score = 104 bits (114), Expect = 2e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| ||||| || ||| ||||||| ||||| || || | |||||||| ||||| || Sbjct 871906 GACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATCTTTGCGGGCAAGCAGCTTGAG 871847 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 || | |||||||| |||||||||||||| ||||| | || ||||| |||||||| Sbjct 871846 GATGGCCGCACCCTGGCTGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTGCTG 871787 Query 38457 CGTTTGAGAGGCGGC 38471 || || | |||||| Sbjct 871786 CGCCTGCGCGGCGGC 871772 Score = 93.3 bits (102), Expect = 4e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 || || ||| ||||||| ||||| || || | |||||||| ||||| || || | ||| Sbjct 866396 GGCATCCCCCCCGACCAGCAGCGCCTGATCTTTGCGGGCAAGCAGCTTGAGGATGGCCGC 866337 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGA 38465 ||||| |||||||||||||| ||||| | || ||||| |||||||||| || | Sbjct 866336 ACCCTGGCTGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTGCGC 866277 Query 38466 GGCGGC 38471 |||||| Sbjct 866276 GGCGGC 866271 >seq16 Length=1197677 Score = 96.9 bits (106), Expect = 3e-15 Identities = 99/128 (77%), Gaps = 1/128 (1%) Strand=Plus/Plus Query 38351 TCCCGCC-GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCC 38409 ||||||| ||||| ||||| || || | |||||||| |||||||| || | | ||||| Sbjct 458090 TCCCGCCCGACCAGCAGCGCCTGATCTTTGCGGGCAAGCAGCTGGAGGATGGCCACACCC 458149 Query 38410 TCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCG 38469 | ||||||||||||||| ||||| | || ||||| |||||||||| || | |||| Sbjct 458150 TGGCCGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTGCGCGGCG 458209 Query 38470 GCCGCCGC 38477 || || || Sbjct 458210 GCGGCGGC 458217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500170211605760