Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20variabilis_20[refseq_20GCF_5F000147415.1_202010-09-16] 414 sequences; 46,159,512 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq3 116 7e-21 seq26 87.8 3e-12 >seq3 Length=2414369 Score = 116 bits (128), Expect = 7e-21 Identities = 117/152 (77%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 48122 TAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAG 48181 || |||| |||||||||||| |||||| || ||||| || |||||| |||||||| Sbjct 915888 TACAGCAGGCAGGCAAAGTCGGTGTGCAGTCCCTCGTCGCGCGAGATGAGTTCGTTGGAG 915947 Query 48182 AAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCA 48241 ||| ||| || ||||||| || | || ||||||||||| || | ||| ||||| Sbjct 915948 AAGGTGAGGCCGGGCATGAGTCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCG 916007 Query 48242 GAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273 |||||||||||||||||||| ||| ||||| Sbjct 916008 GAGAAGAAGATGCCCTCCACGCACGCAAACGC 916039 >seq26 Length=676052 Score = 87.8 bits (96), Expect = 3e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 212954 GTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGT 213013 ||| || ||||| ||||||| || ||||||||| ||||| ||||| |||||||| || Sbjct 477054 GTTGGAGGTGTATGGCTCGAAGCACTCGTTGTTGCCCAGGATCTGGCTGGTGCTGGCGGT 477113 Query 213014 GGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCT 213054 ||||||||| |||||||| || ||| | ||| |||| || Sbjct 477114 GGGCATGGGTGCCACCAGCAGCGAGTTGCGCACACCGTTCT 477154 Score = 86.0 bits (94), Expect = 1e-11 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 213544 CGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGG 213603 |||||||||||||| | |||||||||||||||||| ||||| ||||| ||||| Sbjct 478449 CGGTGCACAGGTTGGACGACTTGATGGTGCCCAGGTTCTGCTGGTTGGACTTGCGGTTGG 478508 Query 213604 CAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTAT 213658 | || |||||||| |||||| | ||| || ||||| | ||| | | |||| || Sbjct 478509 CGGAGTCCTTGTACAGCATGAACGGGTTGCCCGTCTCCACCTGCGCCTCCAGGAT 478563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931527979317760