Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20variabilis_20[refseq_20GCF_5F000147415.1_202010-09-16] 414 sequences; 46,159,512 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq3 122 2e-22 seq26 104 4e-17 seq20 91.5 3e-13 >seq3 Length=2414369 Score = 122 bits (134), Expect = 2e-22 Identities = 133/169 (79%), Gaps = 6/169 (4%) Strand=Plus/Minus Query 25876 GAGCGGCTGGTAGCCTTTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGG 25933 ||||| ||| | || ||||| ||| |||||||||||||| ||| ||| || || ||| Sbjct 916051 GAGCGCCTGATTGCGTTTGCGTGC-GTGGAGGGCATCTTCTTCTCCGGCTCCTTCTGCT- 915994 Query 25934 CCATCTTCTGGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992 ||||||||||||||||| || | |||| ||||||||| || ||| |||||||| ||| Sbjct 915993 CCATCTTCTGGCTCAAGAAGC-GCGGACTCATGCCCGGCCTCACCTTCTCCAACGAACTC 915935 Query 25993 ATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACA 26041 ||| | |||||||| || |||| || |||||||||||||| |||| Sbjct 915934 ATCTCGCGCGACGAGGGACTGCACACCGACTTTGCCTGCCTGCTGTACA 915886 >seq26 Length=676052 Score = 104 bits (114), Expect = 4e-17 Identities = 78/92 (85%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 221161 GTTAGAAGTGAACGGTTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGT 221220 ||| || ||| | || |||| || ||||||||||||||||||||| ||||||||||| Sbjct 477054 GTTGGAGGTGTATGGCTCGAAGCACTCGTTGTTGCCCAGGATCTGGCTGGTGCTGGCGGT 477113 Query 221221 GGGCATGGGTGCCACCAGCAGACTGTTGCGCA 221252 ||||||||||||||||||||| |||||||| Sbjct 477114 GGGCATGGGTGCCACCAGCAGCGAGTTGCGCA 477145 >seq20 Length=953202 Score = 91.5 bits (100), Expect = 3e-13 Identities = 186/268 (69%), Gaps = 9/268 (3%) Strand=Plus/Plus Query 25689 TTTCTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCT 25748 ||| |||| |||||||| ||||| || |||||| ||| |||| | ||| || Sbjct 640055 TTTTTACGCTTTCCAGAGTGCCATTGAGGCGGTGCACAGCGAGATGTACGGGCTGCTGCT 640114 Query 25749 GATGACGTACATTACAGACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACAT 25808 | | ||||||| ||| | |||| | || | ||| || ||| | || ||| Sbjct 640115 GGAGCAGTACATTCGGGACCCAGACGAGCGCGACCTGCTCTTCCACGCCGTGGATACCAT 640174 Query 25809 ACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGC-GCTA 25867 ||| || || ||| |||||||| |||||| ||||||||||| | || ||| ||| Sbjct 640175 CCCCTGCGTCCAGAAGAAGGCGCAGTGGGCGATGAAGTGGATAGAGAG---TAGCAGCTG 640231 Query 25868 CGTTTGGCGAGCGGCTGGTAGCCTTTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCG 25926 | |||| ||||||||||| || | ||| ||| |||||||| ||| ||| || || Sbjct 640232 C-TTTGCAGAGCGGCTGGTGGCATATGCGTGC-GTGGAGGGTATCCACTTCTCAGGCTCC 640289 Query 25927 TT-TGCGGCCATCTTCTGGCTCAAGCAG 25953 || ||| ||||||||||||| ||| || Sbjct 640290 TTCTGC-TCCATCTTCTGGCTGAAGAAG 640316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928839993228160