Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20variabilis_20[refseq_20GCF_5F000147415.1_202010-09-16] 414 sequences; 46,159,512 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq3 136 5e-27 seq20 89.7 6e-13 >seq3 Length=2414369 Score = 136 bits (150), Expect = 5e-27 Identities = 126/160 (79%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 65070 CTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATT 65129 |||| | |||||||| ||||||||||||| |||||||| |||||||||||||| || || Sbjct 916058 CTTCTCGGAGCGCCTGATTGCGTTTGCGTGCGTGGAGGGCATCTTCTTCTCCGGCTCCTT 915999 Query 65130 CTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGA 65189 |||| | || | ||| | |||||||| || |||||||| ||||| |||||| || || Sbjct 915998 CTGCTCCATCTTCTGGCTCAAGAAGCGCGGACTCATGCCCGGCCTCACCTTCTCCAACGA 915939 Query 65190 ACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCC 65229 ||| || || || || ||||| || ||| || |||||| Sbjct 915938 ACTCATCTCGCGCGACGAGGGACTGCACACCGACTTTGCC 915899 >seq20 Length=953202 Score = 89.7 bits (98), Expect = 6e-13 Identities = 112/152 (74%), Gaps = 5/152 (3%) Strand=Plus/Plus Query 65021 AGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTC-GCTCCTTCGCCGAG 65079 ||||||||||| | ||||| ||||| ||| | || | || | ||| ||| || ||| Sbjct 640186 AGAAGAAGGCGCAGTGGGCGATGAAGTGGATAGAGA----GTAGCAGCTGCTTTGCAGAG 640241 Query 65080 CGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATT 65139 || || | || | |||||| |||||||||||| |||||| || || |||||| | || Sbjct 640242 CGGCTGGTGGCATATGCGTGCGTGGAGGGTATCCACTTCTCAGGCTCCTTCTGCTCCATC 640301 Query 65140 TATTGGTTGAAGAAGCGGGGTCTCATGCCAGG 65171 | ||| |||||||||| |||||||| || Sbjct 640302 TTCTGGCTGAAGAAGCGCCAGCTCATGCCGGG 640333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596566512752320