Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20variabilis_20[refseq_20GCF_5F000147415.1_202010-09-16] 414 sequences; 46,159,512 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq13 104 2e-17 seq3 100 2e-16 seq7 95.1 8e-15 seq4 91.5 1e-13 >seq13 Length=1343205 Score = 104 bits (114), Expect = 2e-17 Identities = 95/120 (79%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | |||| ||||||||| ||||| ||||| | ||| |||| |||| Sbjct 880626 CAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATC 880685 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| || || || ||||| || |||||||| |||| | |||||||||||| Sbjct 880686 CTCCAGCTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCGGGCGGGATCCCCTCCTTGTC 880745 >seq3 Length=2414369 Score = 100 bits (110), Expect = 2e-16 Identities = 94/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | |||| ||||||||| ||||| ||||| | ||| |||| |||| Sbjct 739739 CAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATC 739680 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| || || |||| ||| || |||||||| |||| | ||||||||||| Sbjct 739679 CTCCAGCTGCTTGCCCGCAAAGACCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTC 739620 >seq7 Length=1828856 Score = 95.1 bits (104), Expect = 8e-15 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | |||| ||||||||| ||||| ||||| | ||| |||| |||| Sbjct 864777 CAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCATC 864836 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| || || |||||||| || |||||||| | || | ||||||||||| Sbjct 864837 CTCAAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTC 864896 Score = 95.1 bits (104), Expect = 8e-15 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | |||| ||||||||| ||||| ||||| | ||| |||| |||| Sbjct 865280 CAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCATC 865339 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| || || |||||||| || |||||||| | || | ||||||||||| Sbjct 865340 CTCAAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTC 865399 Score = 95.1 bits (104), Expect = 8e-15 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | |||| ||||||||| ||||| ||||| | ||| |||| |||| Sbjct 865783 CAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCATC 865842 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| || || |||||||| || |||||||| | || | ||||||||||| Sbjct 865843 CTCAAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTC 865902 Score = 95.1 bits (104), Expect = 8e-15 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | |||| ||||||||| ||||| ||||| | ||| |||| |||| Sbjct 870781 CAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCATC 870840 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| || || |||||||| || |||||||| | || | ||||||||||| Sbjct 870841 CTCAAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTC 870900 Score = 95.1 bits (104), Expect = 8e-15 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | |||| ||||||||| ||||| ||||| | ||| |||| |||| Sbjct 871284 CAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCATC 871343 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| || || |||||||| || |||||||| | || | ||||||||||| Sbjct 871344 CTCAAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTC 871403 Score = 95.1 bits (104), Expect = 8e-15 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | |||| ||||||||| ||||| ||||| | ||| |||| |||| Sbjct 871787 CAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCATC 871846 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| || || |||||||| || |||||||| | || | ||||||||||| Sbjct 871847 CTCAAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTC 871906 >seq4 Length=2291561 Score = 91.5 bits (100), Expect = 1e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | |||| ||||||||| ||||| ||||| | ||| |||| | || Sbjct 1795775 CAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTC 1795834 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGG 34869 ||||| ||||| || ||||||||||| || |||||||| |||| Sbjct 1795835 CTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGCGG 1795879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325691156676266