Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20variabilis_20[refseq_20GCF_5F000147415.1_202010-09-16] 414 sequences; 46,159,512 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq3 116 4e-21 seq13 98.7 1e-15 seq7 95.1 1e-14 seq4 95.1 1e-14 seq26 89.7 5e-13 seq16 89.7 5e-13 >seq3 Length=2414369 Score = 116 bits (128), Expect = 4e-21 Identities = 121/159 (76%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 120639 CAGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGT 120698 |||||| |||||||| |||||||| |||||||||||||| || || |||||| || || Sbjct 915893 CAGGCAGGCAAAGTCGGTGTGCAGTCCCTCGTCGCGCGAGATGAGTTCGTTGGAGAAGGT 915952 Query 120699 CAGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAA 120758 ||||||||||||| || | |||||| |||| |||| | ||| ||| || || Sbjct 915953 GAGGCCGGGCATGAGTCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCGGAGAA 916012 Query 120759 GAACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTC 120797 ||| | |||||||||| ||||| || | || |||||| Sbjct 916013 GAAGATGCCCTCCACGCACGCAAACGCAATCAGGCGCTC 916051 Score = 91.5 bits (100), Expect = 1e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||| ||||| |||||||| ||| ||| ||| ||| || ||||||||||| Sbjct 739258 GGTGGACTCCTTCTGGATATTGTAGTCGGCCAGGGTGCGGCCGTCTTCCAGCTGCTTGCC 739199 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTC 133567 ||| |||| | ||||||||||| || |||||||| ||||| || Sbjct 739198 CGCAAAAATCAATCGCTGCTGGTCAGGCGGGATGCCCTCCTTATC 739154 Score = 89.7 bits (98), Expect = 5e-13 Identities = 85/106 (80%), Gaps = 2/106 (2%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| ||| ||| ||| | | | ||||| |||||||||| Sbjct 739724 GGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCA-TCCTCCAGCTGCTTGC 739666 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTC 133567 |||| | | || ||||||||||| || |||||||| |||||||| Sbjct 739665 CCGCAAAGACCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTC 739620 >seq13 Length=1343205 Score = 98.7 bits (108), Expect = 1e-15 Identities = 87/106 (82%), Gaps = 2/106 (2%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| ||| ||| ||| | | | ||||| |||||||||| Sbjct 880641 GGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCA-TCCTCCAGCTGCTTGC 880699 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTC 133567 |||| |||| || |||||||||||||| ||||| || |||||||| Sbjct 880700 CCGCAAAAATCAGGCGCTGCTGGTCGGGCGGGATCCCCTCCTTGTC 880745 >seq7 Length=1828856 Score = 95.1 bits (104), Expect = 1e-14 Identities = 86/106 (81%), Gaps = 2/106 (2%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| || ||| ||| | | | ||||| |||||||||| Sbjct 864792 GGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCA-TCCTCAAGCTGCTTGC 864850 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTC 133567 |||| | || || |||||||||||||| |||||||| |||||||| Sbjct 864851 CCGCAAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTC 864896 Score = 95.1 bits (104), Expect = 1e-14 Identities = 86/106 (81%), Gaps = 2/106 (2%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| || ||| ||| | | | ||||| |||||||||| Sbjct 865295 GGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCA-TCCTCAAGCTGCTTGC 865353 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTC 133567 |||| | || || |||||||||||||| |||||||| |||||||| Sbjct 865354 CCGCAAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTC 865399 Score = 95.1 bits (104), Expect = 1e-14 Identities = 86/106 (81%), Gaps = 2/106 (2%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| || ||| ||| | | | ||||| |||||||||| Sbjct 865798 GGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCA-TCCTCAAGCTGCTTGC 865856 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTC 133567 |||| | || || |||||||||||||| |||||||| |||||||| Sbjct 865857 CCGCAAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTC 865902 Score = 95.1 bits (104), Expect = 1e-14 Identities = 86/106 (81%), Gaps = 2/106 (2%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| || ||| ||| | | | ||||| |||||||||| Sbjct 870796 GGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCA-TCCTCAAGCTGCTTGC 870854 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTC 133567 |||| | || || |||||||||||||| |||||||| |||||||| Sbjct 870855 CCGCAAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTC 870900 Score = 95.1 bits (104), Expect = 1e-14 Identities = 86/106 (81%), Gaps = 2/106 (2%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| || ||| ||| | | | ||||| |||||||||| Sbjct 871299 GGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCA-TCCTCAAGCTGCTTGC 871357 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTC 133567 |||| | || || |||||||||||||| |||||||| |||||||| Sbjct 871358 CCGCAAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTC 871403 Score = 95.1 bits (104), Expect = 1e-14 Identities = 86/106 (81%), Gaps = 2/106 (2%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| || ||| ||| | | | ||||| |||||||||| Sbjct 871802 GGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCA-TCCTCAAGCTGCTTGC 871860 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTC 133567 |||| | || || |||||||||||||| |||||||| |||||||| Sbjct 871861 CCGCAAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTC 871906 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/98 (81%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| || ||| ||| | | | ||||| |||||||||| Sbjct 866301 GGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCA-TCCTCAAGCTGCTTGC 866359 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCT 133559 |||| | || || |||||||||||||| ||||||||| Sbjct 866360 CCGCAAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCT 866397 >seq4 Length=2291561 Score = 95.1 bits (104), Expect = 1e-14 Identities = 79/97 (81%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||| ||||| || ||||| ||| ||| ||| |||||| ||||||||||| Sbjct 1795790 GGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCCAGCTGCTTGCC 1795849 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCT 133559 |||| | || || |||||||||||||| ||||||||| Sbjct 1795850 CGCGAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCT 1795886 >seq26 Length=676052 Score = 89.7 bits (98), Expect = 5e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 148654 CCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGCG 148713 |||| ||||||| ||| ||||| ||||| ||||||||| |||| ||| |||| | || Sbjct 477841 CCTGCACGCCCAGGCCGATGGGGCGGTGGCGCATGTTGGAGCGGCGGGCGGTCTCCACCG 477900 Query 148714 GATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACC 148760 | |||| |||| |||||||||||||| || |||||| | ||||| Sbjct 477901 GGTAGTAGTTGACGTCGATGATCTTGTTCAGGTTGCGCGTCGCCACC 477947 Score = 89.7 bits (98), Expect = 5e-13 Identities = 181/265 (68%), Gaps = 14/265 (5%) Strand=Plus/Plus Query 148879 CGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGC 148938 ||| |||||| ||| | ||||| ||||| ||||| || ||| ||||| |||| Sbjct 478449 CGGTGCACAGGTTGGACGACTTGATGGTGCCCAGGTTCTGCTGGTTGGACTTGCGGTTGG 478508 Query 148939 ACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATG--AA 148996 | |||||||||||||||| |||| ||| || |||||||||| |||| ||| || Sbjct 478509 CGGAGTCCTTGTACAGCATGAACGGGTTGCCCGTCTCCACCTGCGCCTCCAGGATGGCAA 478568 Query 148997 CCGATGCAGGTCCTGCGCGCGCACTTGCTG--CT---CGTAGCGACCCTCCTGCTCGTAT 149051 | | ||| | |||||| |||| || || | ||| ||||| ||||||| Sbjct 478569 ACCA--CAGCTGCTGCGC-----CTTGATGACCTTGCGGGCGCGCCCCTCGCGCTCGTAC 478621 Query 149052 AAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGC 149111 | || ||| ||| ||| ||||||| |||| ||| | || |||||| ||| || Sbjct 478622 CGCGAGTAGAGCGCCTCAAACTCCTCGCCCCAGCAGTCGGCCAGGCCGGGGGACTCGTTG 478681 Query 149112 GGGCACATGAGCGACCACACGCCGT 149136 ||||| | || |||| |||||| Sbjct 478682 GGGCAGAACAGGCTCCACTCGCCGT 478706 >seq16 Length=1197677 Score = 89.7 bits (98), Expect = 5e-13 Identities = 82/101 (81%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| ||| ||| ||| | | | ||||| |||||||||| Sbjct 458181 GGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGTGGCCA-TCCTCCAGCTGCTTGC 458123 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCC 133562 |||| | || || |||||||||||||| ||||||||| || Sbjct 458122 CCGCAAAGATCAGGCGCTGCTGGTCGGGCGGGATGCCTGCC 458082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483418298297360