Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20variabilis_20[refseq_20GCF_5F000147415.1_202010-09-16] 414 sequences; 46,159,512 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq3 95.1 1e-14 seq13 91.5 1e-13 seq7 86.0 6e-12 seq4 82.4 7e-11 >seq3 Length=2414369 Score = 95.1 bits (104), Expect = 1e-14 Identities = 81/100 (81%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || || ||||| ||||||| ||| || |||| ||||||||||| |||||||| Sbjct 739252 CTCCTTCTGGATATTGTAGTCGGCCAGGGTGCGGCCGTCTTCCAGCTGCTTGCCCGCAAA 739193 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCC 35644 ||||| ||||||||||| | || | || |||||| ||| Sbjct 739192 AATCAATCGCTGCTGGTCAGGCGGGATGCCCTCCTTATCC 739153 Score = 91.5 bits (100), Expect = 1e-13 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| ||||||| ||| || | || ||||||||||| |||||||| Sbjct 739718 CTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAA 739659 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCC 35644 | || ||||||||||| | || | || |||||||||| Sbjct 739658 GACCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCC 739619 >seq13 Length=1343205 Score = 91.5 bits (100), Expect = 1e-13 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| ||||||| ||| || | || ||||||||||| |||||||| Sbjct 880647 CTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAA 880706 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCC 35644 |||| ||||||||||| | || | | |||||||||| Sbjct 880707 AATCAGGCGCTGCTGGTCGGGCGGGATCCCCTCCTTGTCC 880746 >seq7 Length=1828856 Score = 86.0 bits (94), Expect = 6e-12 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || |||| ||| || | || || |||||||| |||||||| Sbjct 864798 CTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCATCCTCAAGCTGCTTGCCCGCAAA 864857 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCC 35644 |||| ||||||||||| | || | || |||||||||| Sbjct 864858 GATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 864897 Score = 86.0 bits (94), Expect = 6e-12 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || |||| ||| || | || || |||||||| |||||||| Sbjct 865301 CTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCATCCTCAAGCTGCTTGCCCGCAAA 865360 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCC 35644 |||| ||||||||||| | || | || |||||||||| Sbjct 865361 GATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 865400 Score = 86.0 bits (94), Expect = 6e-12 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || |||| ||| || | || || |||||||| |||||||| Sbjct 865804 CTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCATCCTCAAGCTGCTTGCCCGCAAA 865863 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCC 35644 |||| ||||||||||| | || | || |||||||||| Sbjct 865864 GATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 865903 Score = 86.0 bits (94), Expect = 6e-12 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || |||| ||| || | || || |||||||| |||||||| Sbjct 870802 CTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCATCCTCAAGCTGCTTGCCCGCAAA 870861 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCC 35644 |||| ||||||||||| | || | || |||||||||| Sbjct 870862 GATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 870901 Score = 86.0 bits (94), Expect = 6e-12 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || |||| ||| || | || || |||||||| |||||||| Sbjct 871305 CTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCATCCTCAAGCTGCTTGCCCGCAAA 871364 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCC 35644 |||| ||||||||||| | || | || |||||||||| Sbjct 871365 GATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 871404 Score = 86.0 bits (94), Expect = 6e-12 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || |||| ||| || | || || |||||||| |||||||| Sbjct 871808 CTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCATCCTCAAGCTGCTTGCCCGCAAA 871867 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCC 35644 |||| ||||||||||| | || | || |||||||||| Sbjct 871868 GATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 871907 >seq4 Length=2291561 Score = 82.4 bits (90), Expect = 7e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| ||||||| ||| || |||| ||||||||||| ||||| || Sbjct 1795796 CTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCCGCGAA 1795855 Query 35605 TATCAACCGCTGCTGGTC 35622 |||| ||||||||||| Sbjct 1795856 GATCAGGCGCTGCTGGTC 1795873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450791267143120