Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20variabilis_20[refseq_20GCF_5F000147415.1_202010-09-16] 414 sequences; 46,159,512 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq3 132 6e-26 seq20 118 1e-21 seq26 82.4 9e-11 >seq3 Length=2414369 Score = 132 bits (146), Expect = 6e-26 Identities = 121/153 (79%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074 |||||| || ||| || |||||||| || ||||||||||| || |||||| || || Sbjct 915899 GGCAAAGTCGGTGTGCAGTCCCTCGTCGCGCGAGATGAGTTCGTTGGAGAAGGTGAGGCC 915958 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134 |||||||| || |||||||| | |||||| || | || || ||||| ||||||||||| Sbjct 915959 GGGCATGAGTCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCGGAGAAGAAGAT 916018 Query 130135 CCCCTCCACACACGCGAACGCAAAGAGACGCTC 130167 |||||||| ||||| ||||||| || ||||| Sbjct 916019 GCCCTCCACGCACGCAAACGCAATCAGGCGCTC 916051 >seq20 Length=953202 Score = 118 bits (130), Expect = 1e-21 Identities = 129/170 (76%), Gaps = 5/170 (3%) Strand=Plus/Minus Query 130071 GACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGA 130130 |||| |||||||| |||||||||| |||||| || | || || ||||| |||||| Sbjct 640335 GACCCGGCATGAGCTGGCGCTTCTTCAGCCAGAAGATGGAGCAGAAGGAGCCTGAGAAGT 640276 Query 130131 AGATCCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGG-ACTTTGTA 130189 ||| |||||||| ||||| | || | || ||||| |||||| ||| | ||| | || Sbjct 640275 GGATACCCTCCACGCACGCATATGCCACCAGCCGCTCTGCAAAGCAGCTGCTACTCTCTA 640216 Query 130190 TCAAACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGT 130239 || ||||||||||||||||||||||| |||| || || |||| ||| Sbjct 640215 TC----CACTTCATCGCCCACTGCGCCTTCTTCTGGACGCAGGGGATGGT 640170 >seq26 Length=676052 Score = 82.4 bits (90), Expect = 9e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 118181 ATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGA 118240 |||||| |||| ||||||||||| |||||||| ||||| |||| ||| ||| ||| Sbjct 477048 ATAGATGTTGGAGGTGTATGGCTCGAAGCACTCGTTGTTGCCCAGGATCTGGCTGGTGCT 477107 Query 118241 GGCTGTGGGCATGGGTGCCA 118260 ||| |||||||||||||||| Sbjct 477108 GGCGGTGGGCATGGGTGCCA 477127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618431999597840