Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20variabilis_20[refseq_20GCF_5F000147415.1_202010-09-16] 414 sequences; 46,159,512 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq3 125 8e-24 seq26 107 2e-18 >seq3 Length=2414369 Score = 125 bits (138), Expect = 8e-24 Identities = 110/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 59982 CGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATT 60041 || || || || ||||| |||||||| || ||||||||||| ||||| ||||| | || Sbjct 916048 CGCCTGATTGCGTTTGCGTGCGTGGAGGGCATCTTCTTCTCCGGCTCCTTCTGCTCCATC 915989 Query 60042 TTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCC 60101 ||||||||||| ||||| || |||||||| ||||| | ||||||||||| || || || Sbjct 915988 TTCTGGCTCAAGAAGCGCGGACTCATGCCCGGCCTCACCTTCTCCAACGAACTCATCTCG 915929 Query 60102 CGGGACGAGGGCCTCCA 60118 || |||||||| || || Sbjct 915928 CGCGACGAGGGACTGCA 915912 >seq26 Length=676052 Score = 107 bits (118), Expect = 2e-18 Identities = 122/160 (76%), Gaps = 4/160 (3%) Strand=Plus/Plus Query 79555 GTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTG 79614 |||| |||||| || || ||||||||||||||||||| | | |||||| || ||| | Sbjct 479349 GTGTCGTTGAAGACCCGCAGCATGGGCACGATGCCGTTGCTGGTGCCGTTGGTGCCGCGG 479408 Query 79615 ATTCGTGTACCGCTCGCCCGAATGTTCGAGCAGTGGATT--CCGATGCCCCCGGACCACT 79672 || | ||| | || || ||||| | ||| |||| |||||||| |||| ||| Sbjct 479409 ATGTAGGAGCCGGTGGCGCGGATGTT-GTGCA-TGGACAGGCCGATGCCGCCGGCGGACT 479466 Query 79673 TGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCC 79712 |||||||| ||||||||||||||||| ||||||||||| Sbjct 479467 TGGAGATGCTGGCGCACTCCTTGAGCGTGTCGTAGATGCC 479506 Score = 93.3 bits (102), Expect = 5e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 19793 CAGGTCGAGACCGGCACACCGTACATGTGCTACAAGGACGCCGCGAACGCCAAGTCAAAT 19852 ||||| ||||| |||| |||| |||| ||||||||| |||| ||| |||||| || Sbjct 478551 CAGGTGGAGACGGGCAACCCGTTCATGCTGTACAAGGACTCCGCCAACCGCAAGTCCAAC 478492 Query 19853 CAGAAGAACATCGGCGCGATCAAGTCGTCCAACCTGTGTAC 19893 ||| ||||| | ||| | |||||||||||||||||||| || Sbjct 478491 CAGCAGAACCTGGGCACCATCAAGTCGTCCAACCTGTGCAC 478451 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 78535 TAGATGTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGAG 78594 |||||||||| ||||| |||||||| ||||||||| |||| ||||||| ||| | Sbjct 477049 TAGATGTTGGAGGTGTATGGCTCGAAGCACTCGTTGTTGCCCAGGATCTGGCTGGTGCTG 477108 Query 78595 GCGGTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGACC 78635 ||||| ||||||||||| ||||| || || || || | ||| Sbjct 477109 GCGGTGGGCATGGGTGCCACCAGCAGCGAGTTGCGCACACC 477149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548521961384160