Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20variabilis_20[refseq_20GCF_5F000147415.1_202010-09-16] 414 sequences; 46,159,512 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq2 104 3e-17 seq26 95.1 1e-14 seq3 91.5 2e-13 >seq2 Length=2568509 Score = 104 bits (114), Expect = 3e-17 Identities = 99/127 (78%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 117467 TGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTG 117526 ||||||| ||||||||||| |||||| | |||||| | ||| | | ||||||| |||| Sbjct 936845 TGCTCCGACACGTAGCCCGACAGCTGCGACACCTTGACGTCGGTCTTCAGGTTGCGCTTG 936786 Query 117527 AGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATC 117586 | ||||||| | || | ||||||||| | |||||||| || ||| ||| || ||||| Sbjct 936785 AAGCAGGCAAACATGATCTTGCGCTGCCCCGGCTTCAGCCCGTCCACCATGTTGGGGATG 936726 Query 117587 GAACGCT 117593 || |||| Sbjct 936725 GAGCGCT 936719 >seq26 Length=676052 Score = 95.1 bits (104), Expect = 1e-14 Identities = 119/160 (74%), Gaps = 4/160 (3%) Strand=Plus/Minus Query 53369 GGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGG- 53427 ||||||||||| |||||||||||||| ||| ||||||||||| | || || ||||| Sbjct 479506 GGCATCTACGACACGCTCAAGGAGTGCGCCAGCATCTCCAAGTCCGCCGGCGGCATCGGC 479447 Query 53428 -TATCCACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCG 53486 | |||| ||| | ||| |||| || | |||| | ||| || || |||||| | Sbjct 479446 CTGTCCA-TGCAC-AACATCCGCGCCACCGGCTCCTACATCCGCGGCACCAACGGCACCA 479389 Query 53487 CCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACAC 53526 | | || |||||||| ||||| || ||||||||| |||| Sbjct 479388 GCAACGGCATCGTGCCCATGCTGCGGGTCTTCAACGACAC 479349 Score = 89.7 bits (98), Expect = 6e-13 Identities = 170/245 (69%), Gaps = 4/245 (2%) Strand=Plus/Minus Query 53720 GAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTC-CAGGGTGTCTACGGTGAGGA 53778 |||||| |||| | ||||| ||||||| ||||||||| | | || || || ||||| Sbjct 478701 GAGTGGAGCCTGTTCTGCCCCAACGAGTCCCCCGGCCTGGCCGACTG-CTGGGGCGAGGA 478643 Query 53779 GTTTAACGAGATGTATCGGACGTACGCAGTTC-AGGGCCGCTACAAGAAGAAGGTCAAGG 53837 |||| | | | | || | ||||| || | |||| ||| | ||| |||||| Sbjct 478642 GTTTGAGGCGCTCTACTCGCGGTACG-AGCGCGAGGGGCGCGCCCGCAAGGTCATCAAGG 478584 Query 53838 CGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGT 53897 ||| || | ||| ||| ||||| || |||||||||||||| | |||| |||| Sbjct 478583 CGCAGCAGCTGTGGTTTGCCATCCTGGAGGCGCAGGTGGAGACGGGCAACCCGTTCATGC 478524 Query 53898 GCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATCGA 53957 |||||||| || | |||| ||| ||||||| ||||| | ||| |||||| ||| Sbjct 478523 TGTACAAGGACTCCGCCAACCGCAAGTCCAACCAGCAGAACCTGGGCACCATCAAGTCGT 478464 Query 53958 GCAAC 53962 |||| Sbjct 478463 CCAAC 478459 Score = 82.4 bits (90), Expect = 8e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 |||||||| ||||| ||||| || ||||| ||||| || |||||| |||||||| Sbjct 477143 CGCAACTCGCTGCTGGTGGCACCCATGCCCACCGCCAGCACCAGCCAGATCCTGGGCAAC 477084 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTA 55578 |||||| |||||||| ||||| |||||||||| Sbjct 477083 AACGAGTGCTTCGAGCCATACACCTCCAACATCTA 477049 >seq3 Length=2414369 Score = 91.5 bits (100), Expect = 2e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 74789 TTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACA 74848 ||| || || || | ||||| ||||| ||||| |||||||| | ||| ||||||| || Sbjct 915938 TTCGTTGGAGAAGGTGAGGCCGGGCATGAGTCCGCGCTTCTTGAGCCAGAAGATGGAGCA 915997 Query 74849 GAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAA 74908 |||||| || |||||||||||| || || |||||||| || | ||||| | || ||| Sbjct 915998 GAAGGAGCCGGAGAAGAAGATGCCCTCCACGCACGCAAACGCAATCAGGCGCTCCGAGAA 916057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547213168157200