Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20variabilis_20[refseq_20GCF_5F000147415.1_202010-09-16] 414 sequences; 46,159,512 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq13 118 1e-21 seq7 113 5e-20 seq3 109 6e-19 seq2 95.1 1e-14 seq16 86.0 7e-12 seq4 84.2 2e-11 >seq13 Length=1343205 Score = 118 bits (130), Expect = 1e-21 Identities = 112/142 (79%), Gaps = 1/142 (1%) Strand=Plus/Minus Query 27496 CAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTC 27555 |||||||||||||| || || || ||||||||||| || |||||||| || ||||| || Sbjct 880748 CAGGACAAGGAGGGGATCCCGCCCGACCAGCAGCGCCTGATTTTTGCGGGCAAGCAGCTG 880689 Query 27556 GAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTC 27615 ||||||| || ||||| || ||||| || |||| ||||| ||||| || || || || Sbjct 880688 GAGGATGGCCGCACCCTGGCCGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTG 880629 Query 27616 TTGCGTCTTCGCGGTGGACAAG 27637 |||| || ||||| || |||| Sbjct 880628 CTGCGCCTGCGCGGCGG-CAAG 880608 >seq7 Length=1828856 Score = 113 bits (124), Expect = 5e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 27496 CAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTC 27555 |||||||||||||| || || || ||||||||||| || || ||||| || ||||| || Sbjct 864899 CAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATCTTTGCGGGCAAGCAGCTT 864840 Query 27556 GAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTC 27615 ||||||| || ||||| || ||||| || |||| ||||| ||||| || || || || Sbjct 864839 GAGGATGGCCGCACCCTGGCTGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTG 864780 Query 27616 TTGCGTCTTCGCGGTGG 27632 |||| || ||||| || Sbjct 864779 CTGCGCCTGCGCGGCGG 864763 Score = 113 bits (124), Expect = 5e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 27496 CAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTC 27555 |||||||||||||| || || || ||||||||||| || || ||||| || ||||| || Sbjct 865402 CAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATCTTTGCGGGCAAGCAGCTT 865343 Query 27556 GAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTC 27615 ||||||| || ||||| || ||||| || |||| ||||| ||||| || || || || Sbjct 865342 GAGGATGGCCGCACCCTGGCTGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTG 865283 Query 27616 TTGCGTCTTCGCGGTGG 27632 |||| || ||||| || Sbjct 865282 CTGCGCCTGCGCGGCGG 865266 Score = 113 bits (124), Expect = 5e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 27496 CAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTC 27555 |||||||||||||| || || || ||||||||||| || || ||||| || ||||| || Sbjct 865905 CAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATCTTTGCGGGCAAGCAGCTT 865846 Query 27556 GAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTC 27615 ||||||| || ||||| || ||||| || |||| ||||| ||||| || || || || Sbjct 865845 GAGGATGGCCGCACCCTGGCTGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTG 865786 Query 27616 TTGCGTCTTCGCGGTGG 27632 |||| || ||||| || Sbjct 865785 CTGCGCCTGCGCGGCGG 865769 Score = 113 bits (124), Expect = 5e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 27496 CAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTC 27555 |||||||||||||| || || || ||||||||||| || || ||||| || ||||| || Sbjct 870903 CAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATCTTTGCGGGCAAGCAGCTT 870844 Query 27556 GAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTC 27615 ||||||| || ||||| || ||||| || |||| ||||| ||||| || || || || Sbjct 870843 GAGGATGGCCGCACCCTGGCTGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTG 870784 Query 27616 TTGCGTCTTCGCGGTGG 27632 |||| || ||||| || Sbjct 870783 CTGCGCCTGCGCGGCGG 870767 Score = 113 bits (124), Expect = 5e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 27496 CAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTC 27555 |||||||||||||| || || || ||||||||||| || || ||||| || ||||| || Sbjct 871406 CAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATCTTTGCGGGCAAGCAGCTT 871347 Query 27556 GAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTC 27615 ||||||| || ||||| || ||||| || |||| ||||| ||||| || || || || Sbjct 871346 GAGGATGGCCGCACCCTGGCTGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTG 871287 Query 27616 TTGCGTCTTCGCGGTGG 27632 |||| || ||||| || Sbjct 871286 CTGCGCCTGCGCGGCGG 871270 Score = 113 bits (124), Expect = 5e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 27496 CAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTC 27555 |||||||||||||| || || || ||||||||||| || || ||||| || ||||| || Sbjct 871909 CAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTGATCTTTGCGGGCAAGCAGCTT 871850 Query 27556 GAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTC 27615 ||||||| || ||||| || ||||| || |||| ||||| ||||| || || || || Sbjct 871849 GAGGATGGCCGCACCCTGGCTGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTG 871790 Query 27616 TTGCGTCTTCGCGGTGG 27632 |||| || ||||| || Sbjct 871789 CTGCGCCTGCGCGGCGG 871773 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || || || || ||||||||||| || || ||||| || ||||| || ||||||| || Sbjct 866396 GGCATCCCCCCCGACCAGCAGCGCCTGATCTTTGCGGGCAAGCAGCTTGAGGATGGCCGC 866337 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 ||||| || ||||| || |||| ||||| ||||| || || || || |||| || ||| Sbjct 866336 ACCCTGGCTGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTGCGC 866277 Query 27628 GGTGG 27632 || || Sbjct 866276 GGCGG 866272 >seq3 Length=2414369 Score = 109 bits (120), Expect = 6e-19 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 27493 ATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 || |||||||||||||| || || || ||||||||||| || | ||||| || ||||| Sbjct 739614 ATGCAGGACAAGGAGGGCATCCCGCCTGACCAGCAGCGCCTGGTCTTTGCGGGCAAGCAG 739673 Query 27553 CTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTA 27612 || ||||||| || ||||| || ||||| || |||| ||||| ||||| || || || Sbjct 739674 CTGGAGGATGGCCGCACCCTGGCCGACTACAACATCCAGAAGGAGTCCACCCTGCACCTG 739733 Query 27613 GTCTTGCGTCTTCGCGGTGG 27632 || |||| || ||||| || Sbjct 739734 GTGCTGCGCCTGCGCGGCGG 739753 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 27496 CAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTC 27555 ||||| |||||||| || || || ||||||||||| | |||||||| || ||||| || Sbjct 739151 CAGGATAAGGAGGGCATCCCGCCTGACCAGCAGCGATTGATTTTTGCGGGCAAGCAGCTG 739210 Query 27556 GAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTC 27615 || || | || ||||| || ||||| ||| |||| ||||| ||||| || || || || Sbjct 739211 GAAGACGGCCGCACCCTGGCCGACTACAATATCCAGAAGGAGTCCACCCTGCACCTGGTG 739270 Query 27616 TTGCGTCTTCGCGGTGG 27632 |||| || || || || Sbjct 739271 CTGCGCCTGCGTGGCGG 739287 >seq2 Length=2568509 Score = 95.1 bits (104), Expect = 1e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 31961 AGCGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACG 32020 |||| ||||| || || ||| |||||| || ||||| ||||||||| | || | | Sbjct 936719 AGCGCTCCATCCCCAACATGGTGGACGGGCTGAAGCCGGGGCAGCGCAAGATCATGTTTG 936778 Query 32021 CCTGCCTCAAGAAGAACCTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGG 32080 ||||| ||||| |||||| || ||| | |||||| |||||||||||||||||||| Sbjct 936779 CCTGCTTCAAGCGCAACCTGAAGACCGACGTCAAGGTGTCGCAGCTGTCGGGCTACGTGT 936838 Query 32081 CAGAGCA 32087 | ||||| Sbjct 936839 CGGAGCA 936845 >seq16 Length=1197677 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || || || || ||||||||||| || || ||||| || ||||| || ||||||| | Sbjct 458086 GGCATCCCGCCCGACCAGCAGCGCCTGATCTTTGCGGGCAAGCAGCTGGAGGATGGCCAC 458145 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 ||||| || ||||| || |||| ||||| ||||| || || || || |||| || ||| Sbjct 458146 ACCCTGGCCGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTGCGC 458205 Query 27628 GGTGG 27632 || || Sbjct 458206 GGCGG 458210 >seq4 Length=2291561 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || || |||||||| || || || ||||| ||||| Sbjct 1796102 ATGCAGATTTTCGTCAAGACCCTCACGGGCAAGACGATCACCCTCGAGGTGGAGTCTTCG 1796043 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || | ||| | ||| ||||||| || ||||||||||||||||| Sbjct 1796042 GACACCATCGAGAATGTGAAGGCCAAGATTCAGGACAAGGAGGG 1795999 Score = 82.4 bits (90), Expect = 9e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || || || || ||||||||||| || || || || || ||||| || ||||| | || Sbjct 1795885 GGCATCCCGCCCGACCAGCAGCGCCTGATCTTCGCGGGCAAGCAGCTGGAGGACGGCCGC 1795826 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 ||||| || ||||| || |||| ||||| ||||| || || || || |||| || ||| Sbjct 1795825 ACCCTGGCCGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTGCGC 1795766 Query 27628 GGTGG 27632 || || Sbjct 1795765 GGCGG 1795761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570307448643680