Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20variabilis_20[refseq_20GCF_5F000147415.1_202010-09-16] 414 sequences; 46,159,512 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq12 145 2e-29 seq19 113 9e-20 seq3 109 1e-18 seq7 107 4e-18 seq6 107 4e-18 seq13 104 5e-17 seq4 100 6e-16 seq16 87.8 4e-12 >seq12 Length=1469606 Score = 145 bits (160), Expect = 2e-29 Identities = 238/343 (69%), Gaps = 0/343 (0%) Strand=Plus/Minus Query 316490 CCTCGAGAAAGCCGGGTTCGGGGAATTTCCACGTAGTCTTCGTCTCGGCGAGCGTGTAGT 316549 |||| || |||||||| ||||| | |||| | || | ||||| || | ||||| Sbjct 587646 CCTCCAGGAAGCCGGGCTCGGGCAGGGACCACTTGGTGGAGGCGTCGGCCAGGGAGTAGT 587587 Query 316550 AACTTGCAGATTCGGGACGCTTCTTCACGAATTCGGACAGATTTCCTTTATACTTCTTCA 316609 | || | ||||| |||| || ||| || | |||||| || || |||||||| | Sbjct 587586 AGGCGGCGGCCTCGGGGCGCTGCTGCACAAACTTGGACAGGTTGCCCAGGTACTTCTTGA 587527 Query 316610 GCTTCAGGTTGGGTTCGTAATGGATGATAGAAGTACAGACAGCATCGAGGAAACCAGAAT 316669 |||| | |||| ||||| |||||||| || | ||||| || || ||||| || || | Sbjct 587526 GCTTGAAGTTGTCCTCGTAGTGGATGATGGAGGAGCAGACGGCGTCCAGGAAGCCCGAGT 587467 Query 316670 CGTGTGATACAATCACACATGAAACGCCTTTTAGGTTGACCAGATAGTCGATCAGCCAGC 316729 |||| || || | ||| | | ||||| || ||| ||||| |||| ||||||||| Sbjct 587466 CGTGGGAGACGACCACCGAGGTGACGCCCTTGAGGCCCACCAGGTAGTTGATCAGCCACT 587407 Query 316730 TCACATTCGACACAGAAAGATGGTTGGTCGGTTCGTCAAGTAGTAGTAGCTTCGCGTCCA 316789 ||| || | ||| ||||||||||| || || || || || | | | |||| || Sbjct 587406 GCACGTTGGTCACGTCCAGATGGTTGGTGGGCTCATCCAGCAGCATGATGTCGGCGTTCA 587347 Query 316790 ACAGCATAGCGCGTGCGAGAGCAAGCTTCATTTTCCACCCCCC 316832 ||||| || || || || || |||||||| ||||| || || Sbjct 587346 TGAGCATGGCCCGCGCCAGGGCCAGCTTCATCTTCCAGCCGCC 587304 Score = 122 bits (134), Expect = 2e-22 Identities = 233/339 (69%), Gaps = 6/339 (2%) Strand=Plus/Minus Query 317564 CCAC-CAACTTTGCCATGTTCCGGATGATGATACACGTCTTCCGACGTACGGGGGTGGTG 317622 |||| || ||| |||||||| |||||||||| |||| ||| || || | ||| |||||| Sbjct 585477 CCACGCACCTTGGCCATGTTGCGGATGATGACGCACGCCTTGCGGCGGATGGGCGTGGTG 585418 Query 317623 CGATCGGCGAGACCGCGGACGAGTAGTGGGGTCAAGATAGACAGGGTCTTCGCATCGACC 317682 || |||| || ||||| ||||| || || || ||| ||||| || ||| || ||| Sbjct 585417 CGGTCGGTCAGGCCGCGCACGAGCAGGGGCACCAGGATGGACAGAGTGCGCGCGTCCACC 585358 Query 317683 GACTGGACGAATGTGGTCGCCGACAGGTTATGGACGCACTCGGGGACGTC-CTGAGGAGA 317741 |||||||| || ||||| || || || || || ||||| ||||| || || ||| || | Sbjct 585357 GACTGGACAAACGTGGTGGCAGAGAGCTTGTGCACGCAGTCGGGCACCTCGCTG-GGGGC 585299 Query 317742 CCCAATGCTCTTCACGAGATGGGGGATGAAGGGTTCGATGTCTTTGTTATCAAT---TTG 317798 || |||| | || ||||| | ||||| || ||||| ||| |||| Sbjct 585298 GCCGATGCAGCGGATCAGGTGGGGCACAAAGGGCTCAATGTCGCGGTTGCCAATGGCGGC 585239 Query 317799 ACAACACGCGATAAGAGCCTTCGTGGCAGCGTCTTTTACCACTTGCTTCAAGTCGAGCAT 317858 || ||| | | || || | ||||| ||| | || |||| | ||| | ||| Sbjct 585238 GCAGCACTTGGTCAGGGCGTCGGTGGCGGCGGCGCGCACGGTGGGCTTGAGGTCCACCAT 585179 Query 317859 GCAATCTGTCACGACAGGGACGATTTCGGGGAGGTACAC 317897 ||| | ||||| || || || || ||||| ||||| || Sbjct 585178 GCAGTTGGTCACCACGGGCACAATCTCGGGCAGGTAGAC 585140 Score = 114 bits (126), Expect = 3e-20 Identities = 99/123 (80%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 316167 GTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCATGTCAAGATGATC 316226 ||| || |||| ||||| ||||| ||||||||||| ||||| |||||||| || || | Sbjct 588314 GTCCTCGCCGGTGGCATAGCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTT 588255 Query 316227 CTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCA 316286 ||| ||||||||||| |||||||| |||||||| || | |||| || || |||||||| Sbjct 588254 CTCAATGTGGTGGAAGGCGTGCTGCGCCACGTAGGCGACGCGCAGGTTGGGGTGCTTCCA 588195 Query 316287 AAC 316289 || Sbjct 588194 CAC 588192 Score = 111 bits (122), Expect = 3e-19 Identities = 116/151 (77%), Gaps = 1/151 (1%) Strand=Plus/Minus Query 317051 TCACAATCGCCCTCATCAGTGTCGACTTGCCAGCACCATTGGGGCCGCAAAGACCATACC 317110 ||||| | || | ||| ||||| |||||||| || || ||||||||||| || || || | Sbjct 586614 TCACA-TGGCGCGCATGAGTGTGGACTTGCCGGCGCCGTTGGGGCCGCACAGGCCGTAGC 586556 Query 317111 GATTTCCCTTCTTCAGATTAAAACGGGTGTTGTTCAGAAGAATCTTACCACCATATGCCA 317170 | | || |||||| | | |||| |||||| || || ||||| |||||||| |||| Sbjct 586555 GCTGGCCGCGCTTCAGGTGCAGGCGGGCGTTGTTGAGCAGGATCTTGCCACCATAGGCCA 586496 Query 317171 GAGAGAACTCACAATCACACAGGTCCTCGCC 317201 | |||||||| || | |||||||||||||| Sbjct 586495 GGGAGAACTCGCAGTTGCACAGGTCCTCGCC 586465 Score = 87.8 bits (96), Expect = 4e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 315684 CTTAAGCGCCTCTGCCATGGCACCGAGACTCTCGCGGTCCACAAAGTTGGTCGGCTCATC 315743 ||| ||||| |||||||| || || ||||||||||| ||||||| |||||||| Sbjct 589201 CTTGAGCGCGGAGGCCATGGCGCCCAGCGACTCGCGGTCCAGGTAGTTGGTGGGCTCATC 589142 Query 315744 AAGAACGATGACGTGGGGTTGTTGCCATAGAGCGGCGCCGATAACGAGCTTTAGTTTTTG 315803 || || | || |||||| || ||||| | ||||| || | || ||||| | || || Sbjct 589141 CAGCACCAGGATGTGGGGCTGCTGCCACATGGCGGCACCCAGCACCAGCTTCACCTTCTG 589082 Query 315804 CCCACCAGACAGTCCACGGAT 315824 || |||||||| || ||||| Sbjct 589081 GCCGCCAGACAGGCCGCGGAT 589061 >seq19 Length=1056282 Score = 113 bits (124), Expect = 9e-20 Identities = 67/70 (96%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 168749 CGAATTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCC 168808 ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| Sbjct 210375 CGAATTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGGCCGGGGTTCGATTCCC 210434 Query 168809 CGATTCGTCG 168818 ||||||| || Sbjct 210435 CGATTCGGCG 210444 >seq3 Length=2414369 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || |||||||| || ||||| || | ||| || || |||||||||||||| || Sbjct 739753 CCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 739694 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||||||||| || || || || ||||||| || || || |||||| ||| Sbjct 739693 AGGGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAGACCAGGCGCTGCTGGTCAGGCGGG 739634 Query 282993 ATACCCTCCTTGTCTTGGAT 283012 || ||||||||||| || || Sbjct 739633 ATGCCCTCCTTGTCCTGCAT 739614 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||||||||| || ||||| || | ||| || || ||||| |||||||| || Sbjct 739287 CCGCCACGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATATTGTAGTCGGCC 739228 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||| || || || || || || ||||| ||||| || || |||||| ||| Sbjct 739227 AGGGTGCGGCCGTCTTCCAGCTGCTTGCCCGCAAAAATCAATCGCTGCTGGTCAGGCGGG 739168 Query 282993 ATACCCTCCTTGTCTTG 283009 || |||||||| || || Sbjct 739167 ATGCCCTCCTTATCCTG 739151 >seq7 Length=1828856 Score = 107 bits (118), Expect = 4e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || |||||||| || ||||| || | ||| || || ||||||||||||||||| Sbjct 864763 CCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCC 864822 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||||||||| || || || || |||||||||| || || ||||| || Sbjct 864823 AGGGTGCGGCCATCCTCAAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGGGGGG 864882 Query 282993 ATACCCTCCTTGTCTTG 283009 || ||||||||||| || Sbjct 864883 ATGCCCTCCTTGTCCTG 864899 Score = 107 bits (118), Expect = 4e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || |||||||| || ||||| || | ||| || || ||||||||||||||||| Sbjct 865266 CCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCC 865325 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||||||||| || || || || |||||||||| || || ||||| || Sbjct 865326 AGGGTGCGGCCATCCTCAAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGGGGGG 865385 Query 282993 ATACCCTCCTTGTCTTG 283009 || ||||||||||| || Sbjct 865386 ATGCCCTCCTTGTCCTG 865402 Score = 107 bits (118), Expect = 4e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || |||||||| || ||||| || | ||| || || ||||||||||||||||| Sbjct 865769 CCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCC 865828 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||||||||| || || || || |||||||||| || || ||||| || Sbjct 865829 AGGGTGCGGCCATCCTCAAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGGGGGG 865888 Query 282993 ATACCCTCCTTGTCTTG 283009 || ||||||||||| || Sbjct 865889 ATGCCCTCCTTGTCCTG 865905 Score = 107 bits (118), Expect = 4e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || |||||||| || ||||| || | ||| || || ||||||||||||||||| Sbjct 870767 CCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCC 870826 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||||||||| || || || || |||||||||| || || ||||| || Sbjct 870827 AGGGTGCGGCCATCCTCAAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGGGGGG 870886 Query 282993 ATACCCTCCTTGTCTTG 283009 || ||||||||||| || Sbjct 870887 ATGCCCTCCTTGTCCTG 870903 Score = 107 bits (118), Expect = 4e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || |||||||| || ||||| || | ||| || || ||||||||||||||||| Sbjct 871270 CCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCC 871329 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||||||||| || || || || |||||||||| || || ||||| || Sbjct 871330 AGGGTGCGGCCATCCTCAAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGGGGGG 871389 Query 282993 ATACCCTCCTTGTCTTG 283009 || ||||||||||| || Sbjct 871390 ATGCCCTCCTTGTCCTG 871406 Score = 107 bits (118), Expect = 4e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || |||||||| || ||||| || | ||| || || ||||||||||||||||| Sbjct 871773 CCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCC 871832 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||||||||| || || || || |||||||||| || || ||||| || Sbjct 871833 AGGGTGCGGCCATCCTCAAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGGGGGG 871892 Query 282993 ATACCCTCCTTGTCTTG 283009 || ||||||||||| || Sbjct 871893 ATGCCCTCCTTGTCCTG 871909 Score = 96.9 bits (106), Expect = 7e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || |||||||| || ||||| || | ||| || || ||||||||||||||||| Sbjct 866272 CCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCC 866331 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTC 282985 || |||||||||||||| || || || || |||||||||| || || ||||| Sbjct 866332 AGGGTGCGGCCATCCTCAAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTC 866384 >seq6 Length=2058122 Score = 107 bits (118), Expect = 4e-18 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 168745 ATGACGAATTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAAT 168804 ||| ||||||||||||||||||||||||||||||||||||||||||| || |||||| || Sbjct 763712 ATGTCGAATTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGGCCAGGGTTCGAT 763771 Query 168805 TCCCCGATTCGTCG 168818 |||| |||||| || Sbjct 763772 TCCCTGATTCGGCG 763785 >seq13 Length=1343205 Score = 104 bits (114), Expect = 5e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || |||||||| || ||||| || | ||| || || |||||||||||||| || Sbjct 880612 CCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 880671 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||||||||| || || || || ||||| |||| || || ||||| ||| Sbjct 880672 AGGGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCGGGCGGG 880731 Query 282993 ATACCCTCCTTGTCTTG 283009 || ||||||||||| || Sbjct 880732 ATCCCCTCCTTGTCCTG 880748 >seq4 Length=2291561 Score = 100 bits (110), Expect = 6e-16 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 282995 ACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTC 283054 |||||||||||| || ||||| || || || | ||||| |||||||||| || || || Sbjct 1795998 ACCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGACTCCACCTC 1796057 Query 283055 GAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| ||||||||||| ||||| | ||||| ||||| |||||||| Sbjct 1796058 GAGGGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAAATCTGCAT 1796102 >seq16 Length=1197677 Score = 87.8 bits (96), Expect = 4e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || |||||||| || ||||| || | ||| || || |||||||||||||| || Sbjct 458210 CCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 458151 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTC 282985 || ||| |||||||||| || || || || |||||||||| || || ||||| Sbjct 458150 AGGGTGTGGCCATCCTCCAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTC 458098 Score = 84.2 bits (92), Expect = 5e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 168632 ACACTCGCCATAGCTCAGTTGGAAGAGCACCGGACTGTAAAGTAAAACATTCATCCGTAG 168691 || ||| ||||||||||||||||||||| ||||||||| | | | ||| |||| ||| Sbjct 527915 ACTCTCTCCATAGCTCAGTTGGAAGAGCGATGGACTGTAAGTTTAGATATTTATCCATAG 527856 Query 168692 GTCCCCCGTTCGAACCGGGGTGGTGAGAC 168720 ||||| |||||| || |||||| ||||| Sbjct 527855 GTCCCTGGTTCGACCCCGGGTGGAGAGAC 527827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046733647702756