Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20variabilis_20[refseq_20GCF_5F000147415.1_202010-09-16] 414 sequences; 46,159,512 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq3 98.7 7e-16 seq4 93.3 3e-14 seq13 91.5 1e-13 seq7 89.7 4e-13 seq16 87.8 1e-12 >seq3 Length=2414369 Score = 98.7 bits (108), Expect = 7e-16 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || ||||||||| || ||| |||||| ||||| ||||| || Sbjct 739291 CATGCCGCCACGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATATTGTAGTC 739232 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 ||| || ||| |||| ||||||||||| || ||||| ||||| |||||||| || | Sbjct 739231 GGCCAGGGTGCGGCCGTCTTCCAGCTGCTTGCCCGCAAAAATCAATCGCTGCTGGTCAGG 739172 Query 44227 AGGCACACCTTCCTTTTCC 44245 || | || ||||| ||| Sbjct 739171 CGGGATGCCCTCCTTATCC 739153 Score = 95.1 bits (104), Expect = 9e-15 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 44106 TCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAAT 44165 |||| || || | ||| | || ||||||||| || ||| |||||| ||||||||||| | Sbjct 739758 TCATGCCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGT 739699 Query 44166 CGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG 44225 |||| || ||| | || ||||||||||| || ||||||| || |||||||| || | Sbjct 739698 CGGCCAGGGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAGACCAGGCGCTGCTGGTCAG 739639 Query 44226 AAGGCACACCTTCCTTTTCC 44245 || | || ||||| ||| Sbjct 739638 GCGGGATGCCCTCCTTGTCC 739619 >seq4 Length=2291561 Score = 93.3 bits (102), Expect = 3e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 44108 ATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCG 44167 || || || | ||| | || ||||||||| || ||| |||||| ||||||||||| ||| Sbjct 1795758 ATGCCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCG 1795817 Query 44168 GCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || || ||| |||| ||||||||||| || || ||||||| |||||||| || Sbjct 1795818 GCCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTC 1795873 >seq13 Length=1343205 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || ||||||||| || ||| |||||| ||||||||||| ||||| Sbjct 880612 CCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 880671 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| | || ||||||||||| || ||||| |||| |||||||| || | || Sbjct 880672 AGGGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCGGGCGGG 880731 Query 44231 ACACCTTCCTTTTCC 44245 | || ||||| ||| Sbjct 880732 ATCCCCTCCTTGTCC 880746 >seq7 Length=1828856 Score = 89.7 bits (98), Expect = 4e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || ||||||||| || ||| |||||| ||||||||||| || Sbjct 865262 CATGCCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTC 865321 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || ||| | || || |||||||| || |||||||||| |||||||| || | Sbjct 865322 AGCCAGGGTGCGGCCATCCTCAAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGG 865381 Query 44227 AGGCACACCTTCCTTTTCC 44245 || | || ||||| ||| Sbjct 865382 GGGGATGCCCTCCTTGTCC 865400 Score = 89.7 bits (98), Expect = 4e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || ||||||||| || ||| |||||| ||||||||||| || Sbjct 865765 CATGCCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTC 865824 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || ||| | || || |||||||| || |||||||||| |||||||| || | Sbjct 865825 AGCCAGGGTGCGGCCATCCTCAAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGG 865884 Query 44227 AGGCACACCTTCCTTTTCC 44245 || | || ||||| ||| Sbjct 865885 GGGGATGCCCTCCTTGTCC 865903 Score = 89.7 bits (98), Expect = 4e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || ||||||||| || ||| |||||| ||||||||||| || Sbjct 871266 CATGCCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTC 871325 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || ||| | || || |||||||| || |||||||||| |||||||| || | Sbjct 871326 AGCCAGGGTGCGGCCATCCTCAAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGG 871385 Query 44227 AGGCACACCTTCCTTTTCC 44245 || | || ||||| ||| Sbjct 871386 GGGGATGCCCTCCTTGTCC 871404 Score = 89.7 bits (98), Expect = 4e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || ||||||||| || ||| |||||| ||||||||||| || Sbjct 871769 CATGCCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTC 871828 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || ||| | || || |||||||| || |||||||||| |||||||| || | Sbjct 871829 AGCCAGGGTGCGGCCATCCTCAAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGG 871888 Query 44227 AGGCACACCTTCCTTTTCC 44245 || | || ||||| ||| Sbjct 871889 GGGGATGCCCTCCTTGTCC 871907 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || ||||||||| || ||| |||||| ||||||||||| || || Sbjct 864763 CCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCC 864822 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| | || || |||||||| || |||||||||| |||||||| || | || Sbjct 864823 AGGGTGCGGCCATCCTCAAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGGGGGG 864882 Query 44231 ACACCTTCCTTTTCC 44245 | || ||||| ||| Sbjct 864883 ATGCCCTCCTTGTCC 864897 Score = 86.0 bits (94), Expect = 5e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || ||||||||| || ||| |||||| ||||||||||| || Sbjct 866268 CATGCCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTC 866327 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || || ||| | || || |||||||| || |||||||||| |||||||| || Sbjct 866328 AGCCAGGGTGCGGCCATCCTCAAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTC 866384 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || ||||||||| || ||| |||||| ||||||||||| || || Sbjct 870767 CCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCC 870826 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| | || || |||||||| || |||||||||| |||||||| || | || Sbjct 870827 AGGGTGCGGCCATCCTCAAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGGGGGG 870886 Query 44231 ACACCTTCCTTTTCC 44245 | || ||||| ||| Sbjct 870887 ATGCCCTCCTTGTCC 870901 >seq16 Length=1197677 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || ||||||||| || ||| |||||| ||||||||||| ||||| Sbjct 458210 CCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 458151 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || | | | || ||||||||||| || |||||||||| |||||||| || Sbjct 458150 AGGGTGTGGCCATCCTCCAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTC 458098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359988583623438