Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05]
3,600 sequences; 37,342,230 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq625 168 1e-36
seq3285 87.8 4e-12
seq2320 87.8 4e-12
>seq625
Length=19960
Score = 168 bits (186), Expect = 1e-36
Identities = 233/326 (71%), Gaps = 0/326 (0%)
Strand=Plus/Plus
Query 318996 GTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGATGATC 319055
|||||| |||| ||| || ||||| ||||| ||||||||||| |||||||| || || |
Sbjct 9575 GTCTTCGCCGGTGGCGTACCGCCACTGGATGTACTGGTTGGGAGTCATGTCCAGGTGGTT 9634
Query 319056 CTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCA 319115
||||||||||||||| || ||||| |||||||| || | |||| || || ||||||||
Sbjct 9635 CTCGATGTGGTGGAAGGCGTGCTGCGCCACGTAGGCGACCCGCAGGTTGGGGTGCTTCCA 9694
Query 319116 AACACTACCGATGGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCTTTTCCC 319175
|| ||| || |||| | || ||||||| || ||||| || ||
Sbjct 9695 CACCAGACCAGACTCAGCCTCCAGCTCACCAGTGAGCAGACGGATCTGGGTGGACTTGCC 9754
Query 319176 CGCACCGTTTTCGCCCACCACACCGATCCTGGAGTTCAGCGATACCTGGGCATTCACGTT 319235
|||||||| |||| ||| |||| | ||||| ||||| ||||| | || |||||
Sbjct 9755 GGCACCGTTGGGTCCCAGCACCGCGATGCGCGAGTTGAGCGAGACCTGCACGTTGACGTT 9814
Query 319236 GTCAAAGATTAGTTTTTCCGTACCCGGATACTTGAACCCCACACCGCGTAGCTTCATGAT 319295
|| | || | || |||| || |||||||| || ||||| | ||||| |||
Sbjct 9815 GTTGAGGACGTGCTTCTCCGCTGTTGGGTACTTGAAGTTGACGCCGCGCATCTTCAGGAT 9874
Query 319296 GGCACGGTCCTTCGAAGTGATACCCT 319321
|||||||||||| || || | |||||
Sbjct 9875 GGCACGGTCCTTGGAGGTCACACCCT 9900
Score = 163 bits (180), Expect = 6e-35
Identities = 242/343 (71%), Gaps = 0/343 (0%)
Strand=Plus/Plus
Query 319319 CCTCGAGGAACCCGGGCTCGGGGAACTTCCACGTGGTCTTCGTCTCGGTAAGGGCGTAGT 319378
|||| ||| | |||||||| || | | |||| |||| || || | ||| |||||
Sbjct 10084 CCTCCAGGTATCCGGGCTCTGGCAGCACCCACTTGGTGGACGCGTCAGCCAGGTTGTAGT 10143
Query 319379 AACTCGCTGATTCGGGACGCTTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCA 319438
| || | || || |||| || ||| |||| |||||| || ||| |||||||||||
Sbjct 10144 ATGCGGCGGCCTCAGGGCGCTGCTGCACAAACTTGGACAGGTTGCCCAGGTACTTCTTCA 10203
Query 319439 GCTTTAGGTTAGGTTCGTAATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGT 319498
|||| | ||| ||||| ||||| || |||| ||| || | ||||||||| || ||||
Sbjct 10204 GCTTGAAGTTGTCCTCGTAGTGGATGATGGAGGAGCAGACGGAGTCGAGGAAGCCAGAGT 10263
Query 319499 CGTGTGACACAATCACGCACGAAACGTCCTTAAGGTTGATCAGGTATTCAATCAACCACC 319558
|||| || |||| |||| | | ||| |||| ||| | |||||| ||||||| |||
Sbjct 10264 CGTGCGAGACAACCACGGAGGTGACGCCCTTGAGGCCAACCAGGTAGTCAATCAGCCAGG 10323
Query 319559 TCACGTTAGACACAGAAAGATGGTTGGTCGGCTCGTCAAGAAGCAGTAGCTTTGCGTTCA 319618
|||||| | | ||||||||| ||||| || || | || | | |||||||
Sbjct 10324 CCACGTTGGTGGTGTCCAAATGGTTGGTAGGCTCATCCAGCAACATGATGTCGGCGTTCA 10383
Query 319619 GGAGCATTGCACGTGCAAGAGCGAGTTTCATTTTCCACCCTCC 319661
|||||| || || || || || || ||||| ||||| || ||
Sbjct 10384 TGAGCATGGCGCGGGCCAGGGCCAGCTTCATCTTCCAGCCACC 10426
Score = 116 bits (128), Expect = 8e-21
Identities = 226/332 (68%), Gaps = 9/332 (3%)
Strand=Plus/Plus
Query 320401 TTCGCCATGTTCCTGATGATAACACATGTCTTACGCCGAACGGGGGTGGTGCGATCGGCA 320460
|| |||||||| | |||||| || || | ||| || || | |||||||||||| ||||
Sbjct 12279 TTGGCCATGTTGCGGATGATGACGCAGGCCTTGCGGCGGATGGGGGTGGTGCGGTCGGTC 12338
Query 320461 AGCCCGCGGACGAGTAGCGGGGTCAGGATAGACAGGGTCTTCGCGTCAACCGACTGGACG 320520
|| ||||| || || ||||| |||||| |||||||| || || || ||| ||
Sbjct 12339 AGGCCGCGCACAAGCAGCGGCACCAGGATGGACAGGGTGCGGGCATCCACGCTCTGCACA 12398
Query 320521 AACGTGGTCGCAGATAGGTTGTGGACACACTCGGGGACGTCCTGAGGAGAACCAATACTC 320580
|| || ||||| || || ||||| || || ||||| || || || | || || |
Sbjct 12399 AAGGTCGTCGCCGACAGCTTGTGCACGCAGTCGGGCACCTCGCCGGGTGCGCCGATGCAG 12458
Query 320581 TTCACGAGATGGGGAATGAAGGGTTCGATGTCTTTGTTATCAATTTGA---CAACACGCG 320637
| ||||||||| | ||||| || ||||| ||| |||| | || ||| |
Sbjct 12459 CGGATGAGATGGGGCACAAAGGGCTCAATGTCGCGGTTGCCAATGGCAGTGCAGCACTTG 12518
Query 320638 ATAAGAGCCTTCGTGGCACTGTCCTTTACCAC---TTGCTTCAGGTCAATCATACAATCT 320694
| || || | ||||| | || ||| | |||||||||||| ||| || |
Sbjct 12519 GTGAGCGCGTCGGTGGC---GGCCGCGCGCACGGTTGGCTTCAGGTCAACCATGCAGTTG 12575
Query 320695 GTCACCACCGGTACAATTTCGGGAAGGTAGAC 320726
|||||||| || ||||| ||||| ||||| ||
Sbjct 12576 GTCACCACTGGCACAATCTCGGGCAGGTACAC 12607
Score = 109 bits (120), Expect = 1e-18
Identities = 279/423 (66%), Gaps = 9/423 (2%)
Strand=Plus/Plus
Query 318513 CTTAAGTGCTTCGGCCATTGCTCCGAGACTCTCGCGGTCAACGAAGTTGGTCGGTTCGTC 318572
||| || ||| ||||||| || || || ||||||||| | | ||||||| || || ||
Sbjct 8891 CTTGAGGGCTGCGGCCATGGCACCCAGGGACTCGCGGTCCAGGTAGTTGGTGGGCTCATC 8950
Query 318573 CAAAACGATCACGTGGGGTTGTTGCCATAGAGCAGCGCCAATAACCAATTTCAGCTTTTG 318632
|| || | | |||||| || ||||| | || || || | |||| || | ||| ||
Sbjct 8951 CAGCACCAGGATGTGGGGCTGCTGCCACATGGCGGCTCCCAGCACCAGCTTGACCTTCTG 9010
Query 318633 CCCGCCAGATAGACCACGAATGCGAGAATGAGTTGTAAATTCAGGGTCGAGCCCAACATT 318692
|| ||||| || || || || | || || || || || || | | || || | ||
Sbjct 9011 GCCTCCAGACAGGCCGCGGATCTGGGAGTGGGTGGTGAACTCGGCGGGCAGGCCCAGGTT 9070
Query 318693 TGCCATATGTTCTTCCACGTTCTTTGCGGTCAGTGGCTTG---AACATACCATTTGCAAC 318749
||||| || |||||||| || ||||| |||||| | || || || |
Sbjct 9071 GGCCATCATCTCCTCCACGTTGCGGGCAGTCAGGGGCTTGCCCAGCAGTCCGGCGGCGGC 9130
Query 318750 GGCTTCTTTGGTATCAATATCGTTCAGAAGTTTTCCGAAACCATACTCCTCCAGGCGTTC 318809
|| || || | || || ||| |||| | || | ||| || ||||||||| | ||
Sbjct 9131 AGCCTCCTTCATGTCGATGTCGGTCAGCATCTTGCTGAAGCCCATCTCCTCCAGCCTGTC 9190
Query 318810 GCGGGACATCCATTGGGTAGTCTCA---TCGTTTTTCCACTGAACCTCGTACTCGTAAGA 318866
||| | |||||| | | ||||| ||| |||||||| ||||||||||||||
Sbjct 9191 GCGAGTCATCCA---GCTGGTCTCCAGCTCGCCCTTCCACTGCACCTCGTACTCGTAGCC 9247
Query 318867 TTTTTTCAGCTTGCGGCGACCAAGAATCTTGTCAAGAATTTTCTTCACTCCGTCAACGAC 318926
|| ||||||||||| || | |||||||| | ||| || ||||| || ||
Sbjct 9248 GCGCTTGAGCTTGCGGCGGGACAGCAGCTTGTCAACCACGCGCTTGACGCCGTCCACCAC 9307
Query 318927 TTT 318929
||
Sbjct 9308 CTT 9310
>seq3285
Length=63365
Score = 87.8 bits (96), Expect = 4e-12
Identities = 65/76 (86%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 165707 CTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCG 165766
|| ||||| |||||||||||||||||||| || || |||| || |||||||||||||||
Sbjct 63248 CTGGCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 63189
Query 165767 AGCCCCACGATGGGCA 165782
|||||||| |||||
Sbjct 63188 AGCCCCACATCGGGCA 63173
>seq2320
Length=33852
Score = 87.8 bits (96), Expect = 4e-12
Identities = 65/76 (86%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 165707 CTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCG 165766
|| ||||| |||||||||||||||||||| || || |||| || |||||||||||||||
Sbjct 76 CTGGCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 17
Query 165767 AGCCCCACGATGGGCA 165782
|||||||| |||||
Sbjct 16 AGCCCCACATCGGGCA 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1057775207868000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |