Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq625 168 1e-36 seq3285 87.8 4e-12 seq2320 87.8 4e-12 >seq625 Length=19960 Score = 168 bits (186), Expect = 1e-36 Identities = 233/326 (71%), Gaps = 0/326 (0%) Strand=Plus/Plus Query 318996 GTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGATGATC 319055 |||||| |||| ||| || ||||| ||||| ||||||||||| |||||||| || || | Sbjct 9575 GTCTTCGCCGGTGGCGTACCGCCACTGGATGTACTGGTTGGGAGTCATGTCCAGGTGGTT 9634 Query 319056 CTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCA 319115 ||||||||||||||| || ||||| |||||||| || | |||| || || |||||||| Sbjct 9635 CTCGATGTGGTGGAAGGCGTGCTGCGCCACGTAGGCGACCCGCAGGTTGGGGTGCTTCCA 9694 Query 319116 AACACTACCGATGGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCTTTTCCC 319175 || ||| || |||| | || ||||||| || ||||| || || Sbjct 9695 CACCAGACCAGACTCAGCCTCCAGCTCACCAGTGAGCAGACGGATCTGGGTGGACTTGCC 9754 Query 319176 CGCACCGTTTTCGCCCACCACACCGATCCTGGAGTTCAGCGATACCTGGGCATTCACGTT 319235 |||||||| |||| ||| |||| | ||||| ||||| ||||| | || ||||| Sbjct 9755 GGCACCGTTGGGTCCCAGCACCGCGATGCGCGAGTTGAGCGAGACCTGCACGTTGACGTT 9814 Query 319236 GTCAAAGATTAGTTTTTCCGTACCCGGATACTTGAACCCCACACCGCGTAGCTTCATGAT 319295 || | || | || |||| || |||||||| || ||||| | ||||| ||| Sbjct 9815 GTTGAGGACGTGCTTCTCCGCTGTTGGGTACTTGAAGTTGACGCCGCGCATCTTCAGGAT 9874 Query 319296 GGCACGGTCCTTCGAAGTGATACCCT 319321 |||||||||||| || || | ||||| Sbjct 9875 GGCACGGTCCTTGGAGGTCACACCCT 9900 Score = 163 bits (180), Expect = 6e-35 Identities = 242/343 (71%), Gaps = 0/343 (0%) Strand=Plus/Plus Query 319319 CCTCGAGGAACCCGGGCTCGGGGAACTTCCACGTGGTCTTCGTCTCGGTAAGGGCGTAGT 319378 |||| ||| | |||||||| || | | |||| |||| || || | ||| ||||| Sbjct 10084 CCTCCAGGTATCCGGGCTCTGGCAGCACCCACTTGGTGGACGCGTCAGCCAGGTTGTAGT 10143 Query 319379 AACTCGCTGATTCGGGACGCTTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCA 319438 | || | || || |||| || ||| |||| |||||| || ||| ||||||||||| Sbjct 10144 ATGCGGCGGCCTCAGGGCGCTGCTGCACAAACTTGGACAGGTTGCCCAGGTACTTCTTCA 10203 Query 319439 GCTTTAGGTTAGGTTCGTAATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGT 319498 |||| | ||| ||||| ||||| || |||| ||| || | ||||||||| || |||| Sbjct 10204 GCTTGAAGTTGTCCTCGTAGTGGATGATGGAGGAGCAGACGGAGTCGAGGAAGCCAGAGT 10263 Query 319499 CGTGTGACACAATCACGCACGAAACGTCCTTAAGGTTGATCAGGTATTCAATCAACCACC 319558 |||| || |||| |||| | | ||| |||| ||| | |||||| ||||||| ||| Sbjct 10264 CGTGCGAGACAACCACGGAGGTGACGCCCTTGAGGCCAACCAGGTAGTCAATCAGCCAGG 10323 Query 319559 TCACGTTAGACACAGAAAGATGGTTGGTCGGCTCGTCAAGAAGCAGTAGCTTTGCGTTCA 319618 |||||| | | ||||||||| ||||| || || | || | | ||||||| Sbjct 10324 CCACGTTGGTGGTGTCCAAATGGTTGGTAGGCTCATCCAGCAACATGATGTCGGCGTTCA 10383 Query 319619 GGAGCATTGCACGTGCAAGAGCGAGTTTCATTTTCCACCCTCC 319661 |||||| || || || || || || ||||| ||||| || || Sbjct 10384 TGAGCATGGCGCGGGCCAGGGCCAGCTTCATCTTCCAGCCACC 10426 Score = 116 bits (128), Expect = 8e-21 Identities = 226/332 (68%), Gaps = 9/332 (3%) Strand=Plus/Plus Query 320401 TTCGCCATGTTCCTGATGATAACACATGTCTTACGCCGAACGGGGGTGGTGCGATCGGCA 320460 || |||||||| | |||||| || || | ||| || || | |||||||||||| |||| Sbjct 12279 TTGGCCATGTTGCGGATGATGACGCAGGCCTTGCGGCGGATGGGGGTGGTGCGGTCGGTC 12338 Query 320461 AGCCCGCGGACGAGTAGCGGGGTCAGGATAGACAGGGTCTTCGCGTCAACCGACTGGACG 320520 || ||||| || || ||||| |||||| |||||||| || || || ||| || Sbjct 12339 AGGCCGCGCACAAGCAGCGGCACCAGGATGGACAGGGTGCGGGCATCCACGCTCTGCACA 12398 Query 320521 AACGTGGTCGCAGATAGGTTGTGGACACACTCGGGGACGTCCTGAGGAGAACCAATACTC 320580 || || ||||| || || ||||| || || ||||| || || || | || || | Sbjct 12399 AAGGTCGTCGCCGACAGCTTGTGCACGCAGTCGGGCACCTCGCCGGGTGCGCCGATGCAG 12458 Query 320581 TTCACGAGATGGGGAATGAAGGGTTCGATGTCTTTGTTATCAATTTGA---CAACACGCG 320637 | ||||||||| | ||||| || ||||| ||| |||| | || ||| | Sbjct 12459 CGGATGAGATGGGGCACAAAGGGCTCAATGTCGCGGTTGCCAATGGCAGTGCAGCACTTG 12518 Query 320638 ATAAGAGCCTTCGTGGCACTGTCCTTTACCAC---TTGCTTCAGGTCAATCATACAATCT 320694 | || || | ||||| | || ||| | |||||||||||| ||| || | Sbjct 12519 GTGAGCGCGTCGGTGGC---GGCCGCGCGCACGGTTGGCTTCAGGTCAACCATGCAGTTG 12575 Query 320695 GTCACCACCGGTACAATTTCGGGAAGGTAGAC 320726 |||||||| || ||||| ||||| ||||| || Sbjct 12576 GTCACCACTGGCACAATCTCGGGCAGGTACAC 12607 Score = 109 bits (120), Expect = 1e-18 Identities = 279/423 (66%), Gaps = 9/423 (2%) Strand=Plus/Plus Query 318513 CTTAAGTGCTTCGGCCATTGCTCCGAGACTCTCGCGGTCAACGAAGTTGGTCGGTTCGTC 318572 ||| || ||| ||||||| || || || ||||||||| | | ||||||| || || || Sbjct 8891 CTTGAGGGCTGCGGCCATGGCACCCAGGGACTCGCGGTCCAGGTAGTTGGTGGGCTCATC 8950 Query 318573 CAAAACGATCACGTGGGGTTGTTGCCATAGAGCAGCGCCAATAACCAATTTCAGCTTTTG 318632 || || | | |||||| || ||||| | || || || | |||| || | ||| || Sbjct 8951 CAGCACCAGGATGTGGGGCTGCTGCCACATGGCGGCTCCCAGCACCAGCTTGACCTTCTG 9010 Query 318633 CCCGCCAGATAGACCACGAATGCGAGAATGAGTTGTAAATTCAGGGTCGAGCCCAACATT 318692 || ||||| || || || || | || || || || || || | | || || | || Sbjct 9011 GCCTCCAGACAGGCCGCGGATCTGGGAGTGGGTGGTGAACTCGGCGGGCAGGCCCAGGTT 9070 Query 318693 TGCCATATGTTCTTCCACGTTCTTTGCGGTCAGTGGCTTG---AACATACCATTTGCAAC 318749 ||||| || |||||||| || ||||| |||||| | || || || | Sbjct 9071 GGCCATCATCTCCTCCACGTTGCGGGCAGTCAGGGGCTTGCCCAGCAGTCCGGCGGCGGC 9130 Query 318750 GGCTTCTTTGGTATCAATATCGTTCAGAAGTTTTCCGAAACCATACTCCTCCAGGCGTTC 318809 || || || | || || ||| |||| | || | ||| || ||||||||| | || Sbjct 9131 AGCCTCCTTCATGTCGATGTCGGTCAGCATCTTGCTGAAGCCCATCTCCTCCAGCCTGTC 9190 Query 318810 GCGGGACATCCATTGGGTAGTCTCA---TCGTTTTTCCACTGAACCTCGTACTCGTAAGA 318866 ||| | |||||| | | ||||| ||| |||||||| |||||||||||||| Sbjct 9191 GCGAGTCATCCA---GCTGGTCTCCAGCTCGCCCTTCCACTGCACCTCGTACTCGTAGCC 9247 Query 318867 TTTTTTCAGCTTGCGGCGACCAAGAATCTTGTCAAGAATTTTCTTCACTCCGTCAACGAC 318926 || ||||||||||| || | |||||||| | ||| || ||||| || || Sbjct 9248 GCGCTTGAGCTTGCGGCGGGACAGCAGCTTGTCAACCACGCGCTTGACGCCGTCCACCAC 9307 Query 318927 TTT 318929 || Sbjct 9308 CTT 9310 >seq3285 Length=63365 Score = 87.8 bits (96), Expect = 4e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 165707 CTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCG 165766 || ||||| |||||||||||||||||||| || || |||| || ||||||||||||||| Sbjct 63248 CTGGCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 63189 Query 165767 AGCCCCACGATGGGCA 165782 |||||||| ||||| Sbjct 63188 AGCCCCACATCGGGCA 63173 >seq2320 Length=33852 Score = 87.8 bits (96), Expect = 4e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 165707 CTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCG 165766 || ||||| |||||||||||||||||||| || || |||| || ||||||||||||||| Sbjct 76 CTGGCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 17 Query 165767 AGCCCCACGATGGGCA 165782 |||||||| ||||| Sbjct 16 AGCCCCACATCGGGCA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057775207868000