Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq3244 127 2e-24 seq3143 123 3e-23 seq538 113 5e-20 seq3190 104 2e-17 >seq3244 Length=4747 Score = 127 bits (140), Expect = 2e-24 Identities = 109/135 (81%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 |||||||||||||||||| | || ||||| || ||||||| || ||||| |||||||| Sbjct 3558 GACAAAGAGGGCATCCCCCCCGATCAGCAGCGCCTCATCTTTGCCGGCAAGCAGCTGGAG 3617 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || | ||||| || |||||||||||||||||||||| |||| |||| || ||| || Sbjct 3618 GATGGCCGCACGCTGGCCGACTACAACATCCAGAAGGAGTCCACCTTGCACCTGGTGCTG 3677 Query 40903 CGCTTGAGGGGCGGC 40917 ||| || | |||||| Sbjct 3678 CGCCTGCGAGGCGGC 3692 Score = 123 bits (136), Expect = 3e-23 Identities = 112/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 40777 ATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAG 40836 |||| |||||||| ||||||||| | || ||||| || ||||||| |||||||| ||| Sbjct 3100 ATTCAGGACAAAGAAGGCATCCCCCCCGATCAGCAGCGTCTCATCTTTGCGGGCAAGCAG 3159 Query 40837 CTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTA 40896 ||||| || | ||||| || |||||||||||||||||||||| |||| |||| || Sbjct 3160 CTGGAGGATGGCCGCACGCTGGCCGACTACAACATCCAGAAGGAGTCCACCTTGCACCTG 3219 Query 40897 GTGTTGCGCTTGAGGGGCGGC 40917 ||| ||||| || | || ||| Sbjct 3220 GTGCTGCGCCTGCGAGGAGGC 3240 >seq3143 Length=13185 Score = 123 bits (136), Expect = 3e-23 Identities = 103/126 (82%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 ||||||||| | |||||||| || || |||| |||||||| |||||||| |||| ||| Sbjct 6997 GGCATCCCCCCTGACCAGCAGCGCCTGATCTTTGCGGGCAAGCAGCTGGAGGACGGCCGC 7056 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 || || ||||||||||||||||||||| |||||||||| || ||||||||| || | Sbjct 7057 ACACTGGCGGACTACAACATCCAGAAGGAGTCCACGCTGCACCTGGTGTTGCGCCTGCGC 7116 Query 40912 GGCGGC 40917 || ||| Sbjct 7117 GGAGGC 7122 >seq538 Length=19016 Score = 113 bits (124), Expect = 5e-20 Identities = 127/168 (76%), Gaps = 4/168 (2%) Strand=Plus/Plus Query 117035 GAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCC 117094 ||||||||| | || || || ||| |||||| ||||||| || ||| ||| | || Sbjct 16718 GAGCGCCTGATTGCGTTTGCTTGCGTGGAGGGCATCTTCTTCTCCGGCTCCTTCTGCTCC 16777 Query 117095 ATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGAC--TTTCAGCAACGAGCTCA 117152 || || ||||||||||| || || |||||||||||||| || ||||| |||||||||| Sbjct 16778 ATCTTCTGGCTCAAGAAGCGAGGGCTCATGCCCGGCCTCACCTTTTCA--AACGAGCTCA 16835 Query 117153 TCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCA 117200 | || | ||||| || ||||| |||||||| || |||||| || Sbjct 16836 TTTCTCGTGACGAAGGCCTGCACACAGACTTTGCATGCCTGCTGTACA 16883 >seq3190 Length=33988 Score = 104 bits (114), Expect = 2e-17 Identities = 99/127 (78%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 ||||||||| | |||||||| || || |||| |||||||| ||||| || || | ||| Sbjct 16928 GGCATCCCCCCTGACCAGCAGCGCCTGATCTTTGCGGGCAAGCAGCTTGAGGATGGCCGC 16987 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 || || || |||||||||||||||||| |||| ||||| || ||| ||||| || | Sbjct 16988 ACGCTGGCTGATTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTGCGA 17047 Query 40912 GGCGGCG 40918 || |||| Sbjct 17048 GGTGGCG 17054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515196015136000