Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq3244 107 1e-18 seq3143 82.4 5e-11 >seq3244 Length=4747 Score = 107 bits (118), Expect = 1e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| ||||| | |||||||||||| || || || ||||| ||||||||||||| | Sbjct 3691 CCGCCTCGCAGGCGCAGCACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 3632 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| ||| | || |||| ||||||||| || || ||||| |||||||| ||| ||| Sbjct 3631 AGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGATCGGGGGGG 3572 Query 34283 ACGCTCTCCTTGTC 34296 | || ||| ||||| Sbjct 3571 ATGCCCTCTTTGTC 3558 Score = 98.7 bits (108), Expect = 6e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | |||||||||||| || || || ||||| ||||||||||||| | Sbjct 3239 CCTCCTCGCAGGCGCAGCACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 3180 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| ||| | || |||| ||||||||| || || ||||| |||||||| ||| ||| Sbjct 3179 AGCGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAGATGAGACGCTGCTGATCGGGGGGG 3120 Query 34283 ACGCTCTCCTTGTC 34296 | || || ||||| Sbjct 3119 ATGCCTTCTTTGTC 3106 >seq3143 Length=13185 Score = 82.4 bits (90), Expect = 5e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | || ||||||||| | || || ||||| ||||||||||| | | Sbjct 7121 CCTCCGCGCAGGCGCAACACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCC 7062 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC 34275 || ||| |||| |||| ||||||||| || || || || ||||||||||| Sbjct 7061 AGTGTGCGGCCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTC 7009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323057825216000