Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq3244 93.3 4e-14 >seq3244 Length=4747 Score = 93.3 bits (102), Expect = 4e-14 Identities = 113/153 (74%), Gaps = 1/153 (1%) Strand=Plus/Minus Query 94769 AAAT-TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || ||||||| || |||| ||||| |||||| || || ||||| || | Sbjct 3252 AAATATTTGCATGCCTCCTCGCAGGCGCAGCACCAGGTGCAAGGTGGACTCCTTCTGGAT 3193 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 ||| || ||| || ||| | |||||||||||| || || ||||||| | | || Sbjct 3192 GTTGTAGTCGGCCAGCGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAGATGAGACGCTG 3133 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAAT 94920 |||||| || || || ||||||||||| | ||| Sbjct 3132 CTGATCGGGGGGGATGCCTTCTTTGTCCTGAAT 3100 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||| || |||| ||||| |||||| || || ||||| || | ||| || ||| | Sbjct 3691 CCGCCTCGCAGGCGCAGCACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 3632 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | |||||||||||| || ||| ||||||| | | |||||||| || || Sbjct 3631 AGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGATCGGGGGGG 3572 Query 94901 ATACCTTCTTTGTC 94914 || || |||||||| Sbjct 3571 ATGCCCTCTTTGTC 3558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448271026896000