Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1426 131 3e-26 seq120 125 1e-24 seq393 123 4e-24 seq1468 104 4e-18 >seq1426 Length=10354 Score = 131 bits (144), Expect = 3e-26 Identities = 186/262 (71%), Gaps = 0/262 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 9751 CGCCAAGCGCCACCGCAAGGTGCTGCGTGACAACATCCAGGGCATCACCAAGCCCGCCAT 9692 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || ||||| || |||||||| || ||| | |||| || |||| Sbjct 9691 CCGCCGCCTGGCCCGCCGTGGCGGCGTCAAGCGCATCAGTGGCCTCATCTACGAGGAGAC 9632 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | ||| | ||| | ||||| ||| ||| | | || ||| | ||| ||||| Sbjct 9631 TCGCGGTGTGCTCAAGGTGTTCCTGGAGAACGTGGTGCGCGACGCTGTGACCTACACCGA 9572 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| || ||||| |||||| || | ||| | ||||| ||| | || || || || Sbjct 9571 GCACGCTCGCCGCAAGACCGTCACCGCCTTTGATGTTGTCTACGCACTCAAGCGCCAGGG 9512 Query 16672 CCGTAAGATTTATGGTTTTGGA 16693 ||| | | || || |||||| Sbjct 9511 CCGCACCCTGTACGGCTTTGGA 9490 >seq120 Length=22808 Score = 125 bits (138), Expect = 1e-24 Identities = 185/262 (71%), Gaps = 0/262 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 14524 CGCCAAGCGCCACCGCAAGGTGCTGCGTGACAACATCCAGGGCATCACCAAGCCCGCCAT 14465 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || |||||||| || ||| | |||| || |||| Sbjct 14464 CCGCCGCCTGGCCCGCCGAGGCGGCGTCAAGCGCATCAGTGGCCTCATCTACGAGGAGAC 14405 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | |||| | ||| | ||||| ||| ||| | | || ||| | ||| ||||| Sbjct 14404 TCGCGGTGTTCTCAAGGTGTTCCTGGAGAACGTGGTGCGCGACGCTGTGACCTACACCGA 14345 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| || ||||| |||||| || | || | ||||| ||| | || || || || Sbjct 14344 GCACGCTCGCCGCAAGACCGTCACCGCCTTTGACGTTGTCTACGCACTCAAGCGCCAGGG 14285 Query 16672 CCGTAAGATTTATGGTTTTGGA 16693 ||| | | || || |||||| Sbjct 14284 CCGCACCCTGTACGGCTTTGGA 14263 >seq393 Length=25466 Score = 123 bits (136), Expect = 4e-24 Identities = 184/261 (70%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| ||||||| || || || |||||||| || ||||||||||| || || Sbjct 4446 CGCCAAGCGCCATCGCAAGGTGCTGCGTGACAACATCCAGGGCATCACCAAGCCCGCCAT 4505 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| ||||| ||||||||||| || || | | || || |||| Sbjct 4506 CCGCCGTCTGGCTCGCCGTGGCGGAGTCAAGCGCATCAGCGGCCTCATTTACGAGGAGAC 4565 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| ||||| | ||| | ||| ||| | | ||||| | || ||||| Sbjct 4566 CCGCGGTGTGCTGAAGGTGTTCTTGGAGAACGTGGTGCGCGATGCCGTGACGTACACCGA 4625 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| || ||||| |||||| || | || ||||||| || | || || || || Sbjct 4626 GCACGCTCGCCGCAAGACCGTCACCGCCTTTGACGTCGTCTACGCGCTCAAGCGCCAGGG 4685 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||| | | || || ||||| Sbjct 4686 CCGCACCCTGTACGGCTTTGG 4706 >seq1468 Length=448 Score = 104 bits (114), Expect = 4e-18 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 16475 ATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGA 16534 ||||||||||| || ||||| ||||||||||| ||||| || |||||||| || || Sbjct 1 ATCACCAAGCCCGCCATCCGCCGTCTGGCTCGCCGTGGCGGTGTCAAGCGCATCAGCGGC 60 Query 16535 TTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGAT 16594 | ||||||| |||| ||||| ||| | ||| | ||||| ||| ||| | | ||| Sbjct 61 CTCATCTATGAGGAGACTCGTGGTGTGCTCAAGGTGTTCCTGGAGAACGTGGTGCGCGAT 120 Query 16595 GCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTAT 16654 || | || ||||||||||| || ||||| |||||| | | || | ||||| Sbjct 121 GCCGTGACTTACACCGAGCACGCGCGCCGCAAGACCGTCACCGCATTTGACGTTGTCTAC 180 Query 16655 GCATTGAAACGTCAAGGCCG 16674 ||| | || || || ||||| Sbjct 181 GCACTCAAGCGCCAGGGCCG 200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79071908494800