Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05]
3,600 sequences; 37,342,230 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq1426 131 3e-26
seq120 125 1e-24
seq393 123 4e-24
seq1468 104 4e-18
>seq1426
Length=10354
Score = 131 bits (144), Expect = 3e-26
Identities = 186/262 (71%), Gaps = 0/262 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || |||| || || || |||||||| || ||||||||||| || ||
Sbjct 9751 CGCCAAGCGCCACCGCAAGGTGCTGCGTGACAACATCCAGGGCATCACCAAGCCCGCCAT 9692
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || ||||| || ||||| || |||||||| || ||| | |||| || ||||
Sbjct 9691 CCGCCGCCTGGCCCGCCGTGGCGGCGTCAAGCGCATCAGTGGCCTCATCTACGAGGAGAC 9632
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
||| | ||| | ||| | ||||| ||| ||| | | || ||| | ||| |||||
Sbjct 9631 TCGCGGTGTGCTCAAGGTGTTCCTGGAGAACGTGGTGCGCGACGCTGTGACCTACACCGA 9572
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
||||||| || ||||| |||||| || | ||| | ||||| ||| | || || || ||
Sbjct 9571 GCACGCTCGCCGCAAGACCGTCACCGCCTTTGATGTTGTCTACGCACTCAAGCGCCAGGG 9512
Query 16672 CCGTAAGATTTATGGTTTTGGA 16693
||| | | || || ||||||
Sbjct 9511 CCGCACCCTGTACGGCTTTGGA 9490
>seq120
Length=22808
Score = 125 bits (138), Expect = 1e-24
Identities = 185/262 (71%), Gaps = 0/262 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || |||| || || || |||||||| || ||||||||||| || ||
Sbjct 14524 CGCCAAGCGCCACCGCAAGGTGCTGCGTGACAACATCCAGGGCATCACCAAGCCCGCCAT 14465
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || ||||| || || || || |||||||| || ||| | |||| || ||||
Sbjct 14464 CCGCCGCCTGGCCCGCCGAGGCGGCGTCAAGCGCATCAGTGGCCTCATCTACGAGGAGAC 14405
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
||| | |||| | ||| | ||||| ||| ||| | | || ||| | ||| |||||
Sbjct 14404 TCGCGGTGTTCTCAAGGTGTTCCTGGAGAACGTGGTGCGCGACGCTGTGACCTACACCGA 14345
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
||||||| || ||||| |||||| || | || | ||||| ||| | || || || ||
Sbjct 14344 GCACGCTCGCCGCAAGACCGTCACCGCCTTTGACGTTGTCTACGCACTCAAGCGCCAGGG 14285
Query 16672 CCGTAAGATTTATGGTTTTGGA 16693
||| | | || || ||||||
Sbjct 14284 CCGCACCCTGTACGGCTTTGGA 14263
>seq393
Length=25466
Score = 123 bits (136), Expect = 4e-24
Identities = 184/261 (70%), Gaps = 0/261 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| ||||||| || || || |||||||| || ||||||||||| || ||
Sbjct 4446 CGCCAAGCGCCATCGCAAGGTGCTGCGTGACAACATCCAGGGCATCACCAAGCCCGCCAT 4505
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| ||||||||||| ||||| ||||||||||| || || | | || || ||||
Sbjct 4506 CCGCCGTCTGGCTCGCCGTGGCGGAGTCAAGCGCATCAGCGGCCTCATTTACGAGGAGAC 4565
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | ||| ||||| | ||| | ||| ||| | | ||||| | || |||||
Sbjct 4566 CCGCGGTGTGCTGAAGGTGTTCTTGGAGAACGTGGTGCGCGATGCCGTGACGTACACCGA 4625
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
||||||| || ||||| |||||| || | || ||||||| || | || || || ||
Sbjct 4626 GCACGCTCGCCGCAAGACCGTCACCGCCTTTGACGTCGTCTACGCGCTCAAGCGCCAGGG 4685
Query 16672 CCGTAAGATTTATGGTTTTGG 16692
||| | | || || |||||
Sbjct 4686 CCGCACCCTGTACGGCTTTGG 4706
>seq1468
Length=448
Score = 104 bits (114), Expect = 4e-18
Identities = 143/200 (72%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 16475 ATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGA 16534
||||||||||| || ||||| ||||||||||| ||||| || |||||||| || ||
Sbjct 1 ATCACCAAGCCCGCCATCCGCCGTCTGGCTCGCCGTGGCGGTGTCAAGCGCATCAGCGGC 60
Query 16535 TTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGAT 16594
| ||||||| |||| ||||| ||| | ||| | ||||| ||| ||| | | |||
Sbjct 61 CTCATCTATGAGGAGACTCGTGGTGTGCTCAAGGTGTTCCTGGAGAACGTGGTGCGCGAT 120
Query 16595 GCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTAT 16654
|| | || ||||||||||| || ||||| |||||| | | || | |||||
Sbjct 121 GCCGTGACTTACACCGAGCACGCGCGCCGCAAGACCGTCACCGCATTTGACGTTGTCTAC 180
Query 16655 GCATTGAAACGTCAAGGCCG 16674
||| | || || || |||||
Sbjct 181 GCACTCAAGCGCCAGGGCCG 200
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79071908494800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |