Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05]
3,600 sequences; 37,342,230 total letters
Query= NC_006882.2
Length=45176
Score E
Sequences producing significant alignments: (Bits) Value
seq2029 318 2e-82
>seq2029
Length=64692
Score = 318 bits (352), Expect = 2e-82
Identities = 385/524 (73%), Gaps = 0/524 (0%)
Strand=Plus/Minus
Query 19290 TTTTGTGAGTGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTT 19349
|||||||||||||| || || || || ||||| | || | ||||||||||| ||| |
Sbjct 32746 TTTTGTGAGTGGGTTACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTATTA 32687
Query 19350 ATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCG 19409
||||||||| ||| || |||| ||| | ||||| |||| ||||||||||||||
Sbjct 32686 ATGATTCCTACTTTATTAACTGCAACTTCAGTGTTTATCATCGCTTTTATCGCAGCACCT 32627
Query 19410 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 19469
||||| ||||| ||||| || |||||||||||||| || || | | |||||||||||
Sbjct 32626 CCTGTTGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCACTTTTATACGGAAACAAC 32567
Query 19470 ATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATC 19529
|| |||||||| || | |||| | || || ||||| || | || || || || ||
Sbjct 32566 ATCATTTCTGGTGCTATTATTCCTACTTCTAACGCAATCGGTTTACATTTCTACCCTATT 32507
Query 19530 TGGGAAGCCGGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTC 19589
|||||||| | || | || || |||||||||||||| ||||| || |||||| | ||
Sbjct 32506 TGGGAAGCAGCTTCTCTTGACGAATGGTTATACAACGGTGGTCCTTACCAACTTATCGTT 32447
Query 19590 TTCCACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGA 19649
| || ||||| ||||| | | ||| ||| | |||||||| |||||| | |
Sbjct 32446 TGTCATTTCTTCTTAGGAATCTGTTCTTACATGGGTCGTGAGTGGGAATTATCTTTCCGT 32387
Query 19650 TTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCT 19709
||||| ||| | |||||||| || || || |||||||| | | ||||| |||
Sbjct 32386 TTAGGTATGCGTCCATGGATTGCAGTTGCTTACTCAGCACCAGTTGCTGCAGCAACAGCT 32327
Query 19710 GTGTTTCTCGTTTACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATC 19769
|| || || | |||||| | || ||||| ||| ||||||||||||| | |||||
Sbjct 32326 GTATTCATCATCTACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTATT 32267
Query 19770 TCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAA 19813
|||||||| |||||||| ||| ||||||||||||| || || ||
Sbjct 32266 TCTGGTACATTTAACTTCATGATCGTATTCCAAGCTGAGCATAA 32223
Score = 250 bits (276), Expect = 7e-62
Identities = 334/462 (72%), Gaps = 2/462 (0%)
Strand=Plus/Minus
Query 19812 AATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTT 19871
|| || || ||||| || ||||| ||||| || ||||| || ||||| ||||| || |
Sbjct 31300 AACATTCTAATGCACCCATTCCATATGCTAGGCGTTGCCGGTGTATTTGGTGGTTCATTA 31241
Query 19872 TTCTCTGCTATGCACGGAAGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGAT 19931
||||||||||||||||| | || ||||| || | || |||||||||||| |
Sbjct 31240 TTCTCTGCTATGCACGGTTCACTTGTAACTTCTTCTCTAATTCGTGAAACAACTGAGAAC 31181
Query 19932 GTATCGCAGAACTATGGCTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCT 19991
| ||| ||| | || || || ||||| ||||| ||||| || || || || || ||
Sbjct 31180 GAATCAGCTAACGAAGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCA 31121
Query 19992 GCACACGGGTACTTTGGGAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCT 20051
|| || || ||||| || | || || || ||||| |||||||| || || ||||||||
Sbjct 31120 GCTCATGGCTACTTCGGTCGTTTAATTTTCCAATACGCTTCTTTTAACAACTCTCGTTCA 31061
Query 20052 TTACATTTCTTTCTTGCTACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATC 20111
||||||||||| | ||| ||| || || ||||| || ||| |||| | | || ||
Sbjct 31060 TTACATTTCTTCTTAGCTGCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGTATT 31001
Query 20112 TGCACTATGGCTTTCAACCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGATGTCA-A 20170
| ||||||||||||||| | |||||||| ||||| ||||| ||||| || ||| ||| |
Sbjct 31000 TCAACTATGGCTTTCAACTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGAT-TCACA 30942
Query 20171 CGGAAAGATAATCCCAACATGGGCTGATGTATTAAATAGAGCTAACCTCGGATTTGAAGT 20230
|| | || || |||||||| | | || | || ||||| || | |||||
Sbjct 30941 AGGCCGTGTTATTAACACTTGGGCTGACATTATCAACCGTGCCAACCTTGGTATGGAAGT 30882
Query 20231 TATGCACGAGCGCAATGCTCATAACTTCCCACTTGATTTAGC 20272
||||| ||||| || ||||| |||||||| | ||||||||
Sbjct 30881 AATGCATGAGCGTAACGCTCACAACTTCCCGTTAGATTTAGC 30840
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 144435425121600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |