Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq2029 396 4e-105 >seq2029 Length=64692 Score = 396 bits (438), Expect = 4e-105 Identities = 377/482 (78%), Gaps = 0/482 (0%) Strand=Plus/Minus Query 211612 GGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAGCTGCAACAACATGCTTTATCGTA 211671 |||||||||||||| | ||||| || | | || ||||||| || |||||| | Sbjct 32704 GGTTGGTTTGGTGTATTAATGATTCCTACTTTATTAACTGCAACTTCAGTGTTTATCATC 32645 Query 211672 GCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTCA 211731 || || |||||||||||||| ||||||||||| || |||||||| ||||| |||||||| Sbjct 32644 GCTTTTATCGCAGCACCTCCTGTTGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCA 32585 Query 211732 TTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGT 211791 | | || || ||||||||||| |||||||| || |||| |||| |||||||||||| Sbjct 32584 CTTTTATACGGAAACAACATCATTTCTGGTGCTATTATTCCTACTTCTAACGCAATCGGT 32525 Query 211792 TTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGT 211851 ||||| ||||| ||||| ||||||||||| ||||||| || ||| | ||||| |||||| Sbjct 32524 TTACATTTCTACCCTATTTGGGAAGCAGCTTCTCTTGACGAATGGTTATACAACGGTGGT 32465 Query 211852 CCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGACAG 211911 |||||||| | | | | || ||| | | ||||||| | |||||||| | || Sbjct 32464 CCTTACCAACTTATCGTTTGTCATTTCTTCTTAGGAATCTGTTCTTACATGGGTCGTGAG 32405 Query 211912 TGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACCT 211971 |||||| | || | |||||||||||||||||| ||||| |||||||| |||||||| Sbjct 32404 TGGGAATTATCTTTCCGTTTAGGTATGCGTCCATGGATTGCAGTTGCTTACTCAGCACCA 32345 Query 211972 GTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGAC 212031 || | ||||| ||||||||| | | |||||| ||||||| ||||| ||||| || Sbjct 32344 GTTGCTGCAGCAACAGCTGTATTCATCATCTACCCAATCGGTCAAGGTTCTTTCTCTGAT 32285 Query 212032 GGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACAT 212091 ||||||||||||||||| || || ||||| ||||||||| ||||||||||||| || ||| Sbjct 32284 GGTATGCCTTTAGGTATTTCTGGTACATTTAACTTCATGATCGTATTCCAAGCTGAGCAT 32225 Query 212092 AA 212093 || Sbjct 32224 AA 32223 Score = 336 bits (372), Expect = 4e-87 Identities = 351/461 (76%), Gaps = 0/461 (0%) Strand=Plus/Minus Query 212092 AACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTA 212151 ||||| || |||||||||||||||||| ||| ||||| ||| | || ||||| ||||| Sbjct 31300 AACATTCTAATGCACCCATTCCATATGCTAGGCGTTGCCGGTGTATTTGGTGGTTCATTA 31241 Query 212152 TTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGTTTA 212211 |||||||||||||||||||| ||||| || ||||| || || |||||||| |||| Sbjct 31240 TTCTCTGCTATGCACGGTTCACTTGTAACTTCTTCTCTAATTCGTGAAACAACTGAGAAC 31181 Query 212212 GATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTGCT 212271 || ||| ||| | |||||||| ||||| ||||||||||| || || ||||||||||| Sbjct 31180 GAATCAGCTAACGAAGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCA 31121 Query 212272 GCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGAAGT 212331 || ||||| ||||||||| | | || ||||| || || || || |||||| | Sbjct 31120 GCTCATGGCTACTTCGGTCGTTTAATTTTCCAATACGCTTCTTTTAACAACTCTCGTTCA 31061 Query 212332 TTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTATC 212391 ||||| |||||| | || | ||||| ||| | || | ||||| || || | ||||| Sbjct 31060 TTACATTTCTTCTTAGCTGCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGTATT 31001 Query 212392 TGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCATCA 212451 | || ||||| |||||| ||||||| ||||||||||||||||||||||| ||| || | Sbjct 31000 TCAACTATGGCTTTCAACTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAA 30941 Query 212452 GGTAAGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTT 212511 || ||| || ||||||| ||| || | ||| | || ||||||||||||||||| Sbjct 30940 GGCCGTGTTATTAACACTTGGGCTGACATTATCAACCGTGCCAACCTTGGTATGGAAGTA 30881 Query 212512 ATGCACGAAAGAAATGCACACAACTTCCCACTTGACTTAGC 212552 ||||| || | || || ||||||||||| | || ||||| Sbjct 30880 ATGCATGAGCGTAACGCTCACAACTTCCCGTTAGATTTAGC 30840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807518860016000