Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq2029 416 3e-111 >seq2029 Length=64692 Score = 416 bits (460), Expect = 3e-111 Identities = 717/1042 (69%), Gaps = 27/1042 (3%) Strand=Plus/Minus Query 171794 GTTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGG 171853 |||||| ||| ||||||| ||| | | || |||||||| || | |||||||| || Sbjct 63379 GTTTGATGTTGTTGATGACTGGCTTCGTCGCGACCGTTTCGTTTTTGTAGGATGGTCAGG 63320 Query 171854 TCTTTTACTTTTA---CCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTAC 171910 ||||||||| || ||| || || ||| | || |||||||| ||||||||| Sbjct 63319 G---TTACTTTTATTCCCGACTGCATATCTTGCACTTGGTGGTTGGTTTACAGGAACTAC 63263 Query 171911 TTTCGTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAACTT 171970 || || || || ||||| || |||||| | || | |||||| | || || || || Sbjct 63262 ATTTGTAACTTCTTGGTATACTCATGGTTTAGCTACTTCATATTTAGAAGGCTGTAATTT 63203 Query 171971 TTTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTATG 172030 |||||||| || || || || || | || |||||||||| | |||| || || || Sbjct 63202 CTTAACTGCTGCGGTTTCTACTCCAGCAAATAGTATGGGTCATTCTTTATTATTTCTTTG 63143 Query 172031 GGGACCTGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTT 172090 ||| || || || ||||| ||| || || |||| ||| | || || || |||| || Sbjct 63142 GGGCCCAGAAGCTCAAGGTGATTTTACTCGTTGGTGCCAACTTGGAGGTCTTTGGACTTT 63083 Query 172091 TGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGC 172150 ||||| | || || ||| ||| || ||||| |||||| | || ||||| ||||| Sbjct 63082 CGTAGCCCTTCACGGTTCTTTTTCACTGATTGGTTTTATGCTTCGTCAATTTGAAATTGC 63023 Query 172151 AGGACTTGTTGGGATACGTCCTTACAACGCACTAGCATTCTCAGCAGTTATTGCAGTATT 172210 | || || ||||| || ||||| | || || || || ||| | || || Sbjct 63022 TCGTTCAGTAAAAATTCGTCCATATAACGCGATTGCTTTTTCTGCTCCAATTTCTGTTTT 62963 Query 172211 CACGAGCATCTTTCTAATATATCCATTAGGTCAGCATAGTTGGTTCTTCGCACCTTCATT 172270 | | || ||||| || ||||||||||| |||||||||| ||||| || Sbjct 62962 CGTTTCTGTGTTCCTAATTTACCCATTAGGTCAATCAGGTTGGTTCTTTGCACCAAGTTT 62903 Query 172271 TGGTGTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACTCT 172330 |||||| || ||||| || |||| ||| ||||| | || || ||||| || ||| | Sbjct 62902 TGGTGTTGCGGCAATTTTCCGTTTTATCTTATTTTTTCAAGGCTTCCATAACTGGACTTT 62843 Query 172331 TAATCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCAT 172390 || || || ||||||||||||||||| ||| |||| || | || ||||| || ||||| Sbjct 62842 AAACCCTTTCCATATGATGGGTGTAGCTGGTGTACTAGGAGCTGCGTTACTTTGCGCCAT 62783 Query 172391 ACATGGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTGAAGGTAA 172450 |||||||| || ||| | |||||| | | |||||| || | | Sbjct 62782 TCATGGTGCTACTGTAGAAAACACACTTTTTGAAGA---------------TG--GTGAT 62740 Query 172451 GATTCAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAAACTTATAGTAT 172510 | | ||| | || ||| | || || | || || || | ||||||||| || ||| Sbjct 62739 GGTGCAAAC----ACATTCCGTGCGTTTAACCCAACTCAAGCAGAAGAAACATACTCTAT 62684 Query 172511 GATTACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAGATT 172570 | | |||||||||||||| ||||| || || |||||| |||| ||||| || ||| | | Sbjct 62683 GGTAACTGCTAACAGATTTTGGTCTCAAATCTTTGGTGTAGCTTTTTCTAATAAACGTTG 62624 Query 172571 CTTACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGGTAT 172630 ||||||||| ||||| | || || ||||| | || | |||| |||| ||| | Sbjct 62623 GTTACACTTCTTTATGCTTTTTGTTCCTGTAACAGGGCTTTGGATGAGTGCTATTGGTGT 62564 Query 172631 CGTAGGTCTTGCACTTAACCTCAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGC 172690 |||||||| || | ||| | | || ||||| || || || ||||| || | || || Sbjct 62563 AGTAGGTCTAGCTTTAAACTTACGTGCTTACGATTTCGTTTCACAAGAAATTCGCGCTGC 62504 Query 172691 AGAAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTATGAG 172750 |||||| ||||| |||||||| ||||| || || || || ||| | || |||||||| | Sbjct 62503 AGAAGATCCAGAATTTGAAACTTTCTATACCAAAAATATCCTTTTAAACGAAGGTATTCG 62444 Query 172751 AGCATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTT 172810 || |||||| | || ||||| || ||||| || |||| ||||| || || || || Sbjct 62443 TGCTTGGATGGCTGCTCAAGATCAGCCTCATGAAAAACTTGTATTCCCTGAGGAGGTTTT 62384 Query 172811 GCCACGAGGCAACGCACTATAA 172832 ||||| || ||||| || ||| Sbjct 62383 ACCACGTGGAAACGCTCTTTAA 62362 Score = 367 bits (406), Expect = 1e-96 Identities = 398/525 (76%), Gaps = 2/525 (0%) Strand=Plus/Minus Query 170666 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 170725 |||||||||||||| || |||||| || || | ||| | |||||||||||||| ||| Sbjct 32746 TTTTGTGAGTGGGTTACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTATTA 32687 Query 170726 ATGATCCCATGTCTTCTAACTGCTGCTGCT-TGTTTCATTGTAGCATTCATCGCTGCTCC 170784 ||||| || | | ||||||| || | ||||| || | || || ||||| || || Sbjct 32686 ATGATTCCTACTTTATTAACTGCAACTTCAGTGTTT-ATCATCGCTTTTATCGCAGCACC 32628 Query 170785 TCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAA 170844 ||| || |||||||| || ||| | || |||||| | ||||| | ||||| || ||||| Sbjct 32627 TCCTGTTGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCACTTTTATACGGAAACAA 32568 Query 170845 CATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCAT 170904 |||||| ||||||||| | |||| |||| |||||||| || ||||| ||||| || || Sbjct 32567 CATCATTTCTGGTGCTATTATTCCTACTTCTAACGCAATCGGTTTACATTTCTACCCTAT 32508 Query 170905 CTGGGAAGCAGCCACTATGGACGAGTGGTTGTACAACGGAGGTCCTTACCAGTTAGTTAT 170964 ||||||||||| || | ||||| ||||| |||||||| ||||||||||| | | | Sbjct 32507 TTGGGAAGCAGCTTCTCTTGACGAATGGTTATACAACGGTGGTCCTTACCAACTTATCGT 32448 Query 170965 TTTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAG 171024 || || ||| | | ||||||| | | ||||||||| | |||||||| |||| | | | Sbjct 32447 TTGTCATTTCTTCTTAGGAATCTGTTCTTACATGGGTCGTGAGTGGGAATTATCTTTCCG 32388 Query 171025 ACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGC 171084 |||| ||| | || ||||| || || ||||||||||| || |||||||| || Sbjct 32387 TTTAGGTATGCGTCCATGGATTGCAGTTGCTTACTCAGCACCAGTTGCTGCAGCAACAGC 32328 Query 171085 AGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTAT 171144 |||||| | | || ||| ||||||| ||||| ||||||||||||||||| ||||||| Sbjct 32327 TGTATTCATCATCTACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTAT 32268 Query 171145 CTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAA 171189 || ||||| || ||||||||| |||| |||||||| || || || Sbjct 32267 TTCTGGTACATTTAACTTCATGATCGTATTCCAAGCTGAGCATAA 32223 Score = 325 bits (360), Expect = 4e-84 Identities = 351/463 (76%), Gaps = 4/463 (1%) Strand=Plus/Minus Query 171188 AACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTC 171247 ||||| ||||||||||| ||||||||| ||| || || ||| | || |||||| | Sbjct 31300 AACATTCTAATGCACCCATTCCATATGCTAGGCGTTGCCGGTGTATTTGGTGGTTCATTA 31241 Query 171248 TTCAGTGCAATGCACGGTTCTCTAGTGACATCTTCTCTAATCAGAGAGACAACTGAGAAC 171307 ||| ||| ||||||||||| || || || ||||||||||| | || |||||||||||| Sbjct 31240 TTCTCTGCTATGCACGGTTCACTTGTAACTTCTTCTCTAATTCGTGAAACAACTGAGAAC 31181 Query 171308 GAGAGTCAA--AACTACGGCTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTG 171365 || ||| ||| | || || || ||||| |||||||||||||| || ||||| |||| Sbjct 31180 GAA--TCAGCTAACGAAGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTG 31123 Query 171366 CTGCTCATGGATACTTCGGTAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTT 171425 | |||||||| ||||||||| | ||||| ||||| || || || || ||||||||||||| Sbjct 31122 CAGCTCATGGCTACTTCGGTCGTTTAATTTTCCAATACGCTTCTTTTAACAACTCTCGTT 31063 Query 171426 CATTACACTTCTTCCTCGCTGTATTCCCTGTAGTCTGTGTATGGTTAACCTCTATGGGTA 171485 ||||||| |||||| | |||| | || || || || | ||||| || || | |||| Sbjct 31062 CATTACATTTCTTCTTAGCTGCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGTA 31003 Query 171486 TCTGTACAATGGCATTCAACCTTAACGGATTCAACTTCAACCAATCAGTTGTAGATGCAA 171545 | | || ||||| |||||| | || || ||||||||||||||||||||||||||| || Sbjct 31002 TTTCAACTATGGCTTTCAACTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCAC 30943 Query 171546 ACGGAAAGATTGTACCAACATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAG 171605 | || || | || |||| || || | ||| | || |||||||| ||||||| Sbjct 30942 AAGGCCGTGTTATTAACACTTGGGCTGACATTATCAACCGTGCCAACCTTGGTATGGAAG 30883 Query 171606 TTATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGC 171648 | |||||||| | || || ||||||||||| |||| |||| Sbjct 30882 TAATGCATGAGCGTAACGCTCACAACTTCCCGTTAGATTTAGC 30840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570243137904000