Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05]
3,600 sequences; 37,342,230 total letters
Query= NC_006884.2
Length=178249
Score E
Sequences producing significant alignments: (Bits) Value
seq2029 416 3e-111
>seq2029
Length=64692
Score = 416 bits (460), Expect = 3e-111
Identities = 717/1042 (69%), Gaps = 27/1042 (3%)
Strand=Plus/Minus
Query 171794 GTTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGG 171853
|||||| ||| ||||||| ||| | | || |||||||| || | |||||||| ||
Sbjct 63379 GTTTGATGTTGTTGATGACTGGCTTCGTCGCGACCGTTTCGTTTTTGTAGGATGGTCAGG 63320
Query 171854 TCTTTTACTTTTA---CCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTAC 171910
||||||||| || ||| || || ||| | || |||||||| |||||||||
Sbjct 63319 G---TTACTTTTATTCCCGACTGCATATCTTGCACTTGGTGGTTGGTTTACAGGAACTAC 63263
Query 171911 TTTCGTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAACTT 171970
|| || || || ||||| || |||||| | || | |||||| | || || || ||
Sbjct 63262 ATTTGTAACTTCTTGGTATACTCATGGTTTAGCTACTTCATATTTAGAAGGCTGTAATTT 63203
Query 171971 TTTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTATG 172030
|||||||| || || || || || | || |||||||||| | |||| || || ||
Sbjct 63202 CTTAACTGCTGCGGTTTCTACTCCAGCAAATAGTATGGGTCATTCTTTATTATTTCTTTG 63143
Query 172031 GGGACCTGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTT 172090
||| || || || ||||| ||| || || |||| ||| | || || || |||| ||
Sbjct 63142 GGGCCCAGAAGCTCAAGGTGATTTTACTCGTTGGTGCCAACTTGGAGGTCTTTGGACTTT 63083
Query 172091 TGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGC 172150
||||| | || || ||| ||| || ||||| |||||| | || ||||| |||||
Sbjct 63082 CGTAGCCCTTCACGGTTCTTTTTCACTGATTGGTTTTATGCTTCGTCAATTTGAAATTGC 63023
Query 172151 AGGACTTGTTGGGATACGTCCTTACAACGCACTAGCATTCTCAGCAGTTATTGCAGTATT 172210
| || || ||||| || ||||| | || || || || ||| | || ||
Sbjct 63022 TCGTTCAGTAAAAATTCGTCCATATAACGCGATTGCTTTTTCTGCTCCAATTTCTGTTTT 62963
Query 172211 CACGAGCATCTTTCTAATATATCCATTAGGTCAGCATAGTTGGTTCTTCGCACCTTCATT 172270
| | || ||||| || ||||||||||| |||||||||| ||||| ||
Sbjct 62962 CGTTTCTGTGTTCCTAATTTACCCATTAGGTCAATCAGGTTGGTTCTTTGCACCAAGTTT 62903
Query 172271 TGGTGTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACTCT 172330
|||||| || ||||| || |||| ||| ||||| | || || ||||| || ||| |
Sbjct 62902 TGGTGTTGCGGCAATTTTCCGTTTTATCTTATTTTTTCAAGGCTTCCATAACTGGACTTT 62843
Query 172331 TAATCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCAT 172390
|| || || ||||||||||||||||| ||| |||| || | || ||||| || |||||
Sbjct 62842 AAACCCTTTCCATATGATGGGTGTAGCTGGTGTACTAGGAGCTGCGTTACTTTGCGCCAT 62783
Query 172391 ACATGGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTGAAGGTAA 172450
|||||||| || ||| | |||||| | | |||||| || | |
Sbjct 62782 TCATGGTGCTACTGTAGAAAACACACTTTTTGAAGA---------------TG--GTGAT 62740
Query 172451 GATTCAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAAACTTATAGTAT 172510
| | ||| | || ||| | || || | || || || | ||||||||| || |||
Sbjct 62739 GGTGCAAAC----ACATTCCGTGCGTTTAACCCAACTCAAGCAGAAGAAACATACTCTAT 62684
Query 172511 GATTACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAGATT 172570
| | |||||||||||||| ||||| || || |||||| |||| ||||| || ||| | |
Sbjct 62683 GGTAACTGCTAACAGATTTTGGTCTCAAATCTTTGGTGTAGCTTTTTCTAATAAACGTTG 62624
Query 172571 CTTACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGGTAT 172630
||||||||| ||||| | || || ||||| | || | |||| |||| ||| |
Sbjct 62623 GTTACACTTCTTTATGCTTTTTGTTCCTGTAACAGGGCTTTGGATGAGTGCTATTGGTGT 62564
Query 172631 CGTAGGTCTTGCACTTAACCTCAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGC 172690
|||||||| || | ||| | | || ||||| || || || ||||| || | || ||
Sbjct 62563 AGTAGGTCTAGCTTTAAACTTACGTGCTTACGATTTCGTTTCACAAGAAATTCGCGCTGC 62504
Query 172691 AGAAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTATGAG 172750
|||||| ||||| |||||||| ||||| || || || || ||| | || |||||||| |
Sbjct 62503 AGAAGATCCAGAATTTGAAACTTTCTATACCAAAAATATCCTTTTAAACGAAGGTATTCG 62444
Query 172751 AGCATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTT 172810
|| |||||| | || ||||| || ||||| || |||| ||||| || || || ||
Sbjct 62443 TGCTTGGATGGCTGCTCAAGATCAGCCTCATGAAAAACTTGTATTCCCTGAGGAGGTTTT 62384
Query 172811 GCCACGAGGCAACGCACTATAA 172832
||||| || ||||| || |||
Sbjct 62383 ACCACGTGGAAACGCTCTTTAA 62362
Score = 367 bits (406), Expect = 1e-96
Identities = 398/525 (76%), Gaps = 2/525 (0%)
Strand=Plus/Minus
Query 170666 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 170725
|||||||||||||| || |||||| || || | ||| | |||||||||||||| |||
Sbjct 32746 TTTTGTGAGTGGGTTACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTATTA 32687
Query 170726 ATGATCCCATGTCTTCTAACTGCTGCTGCT-TGTTTCATTGTAGCATTCATCGCTGCTCC 170784
||||| || | | ||||||| || | ||||| || | || || ||||| || ||
Sbjct 32686 ATGATTCCTACTTTATTAACTGCAACTTCAGTGTTT-ATCATCGCTTTTATCGCAGCACC 32628
Query 170785 TCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAA 170844
||| || |||||||| || ||| | || |||||| | ||||| | ||||| || |||||
Sbjct 32627 TCCTGTTGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCACTTTTATACGGAAACAA 32568
Query 170845 CATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCAT 170904
|||||| ||||||||| | |||| |||| |||||||| || ||||| ||||| || ||
Sbjct 32567 CATCATTTCTGGTGCTATTATTCCTACTTCTAACGCAATCGGTTTACATTTCTACCCTAT 32508
Query 170905 CTGGGAAGCAGCCACTATGGACGAGTGGTTGTACAACGGAGGTCCTTACCAGTTAGTTAT 170964
||||||||||| || | ||||| ||||| |||||||| ||||||||||| | | |
Sbjct 32507 TTGGGAAGCAGCTTCTCTTGACGAATGGTTATACAACGGTGGTCCTTACCAACTTATCGT 32448
Query 170965 TTTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAG 171024
|| || ||| | | ||||||| | | ||||||||| | |||||||| |||| | | |
Sbjct 32447 TTGTCATTTCTTCTTAGGAATCTGTTCTTACATGGGTCGTGAGTGGGAATTATCTTTCCG 32388
Query 171025 ACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGC 171084
|||| ||| | || ||||| || || ||||||||||| || |||||||| ||
Sbjct 32387 TTTAGGTATGCGTCCATGGATTGCAGTTGCTTACTCAGCACCAGTTGCTGCAGCAACAGC 32328
Query 171085 AGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTAT 171144
|||||| | | || ||| ||||||| ||||| ||||||||||||||||| |||||||
Sbjct 32327 TGTATTCATCATCTACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTAT 32268
Query 171145 CTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAA 171189
|| ||||| || ||||||||| |||| |||||||| || || ||
Sbjct 32267 TTCTGGTACATTTAACTTCATGATCGTATTCCAAGCTGAGCATAA 32223
Score = 325 bits (360), Expect = 4e-84
Identities = 351/463 (76%), Gaps = 4/463 (1%)
Strand=Plus/Minus
Query 171188 AACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTC 171247
||||| ||||||||||| ||||||||| ||| || || ||| | || |||||| |
Sbjct 31300 AACATTCTAATGCACCCATTCCATATGCTAGGCGTTGCCGGTGTATTTGGTGGTTCATTA 31241
Query 171248 TTCAGTGCAATGCACGGTTCTCTAGTGACATCTTCTCTAATCAGAGAGACAACTGAGAAC 171307
||| ||| ||||||||||| || || || ||||||||||| | || ||||||||||||
Sbjct 31240 TTCTCTGCTATGCACGGTTCACTTGTAACTTCTTCTCTAATTCGTGAAACAACTGAGAAC 31181
Query 171308 GAGAGTCAA--AACTACGGCTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTG 171365
|| ||| ||| | || || || ||||| |||||||||||||| || ||||| ||||
Sbjct 31180 GAA--TCAGCTAACGAAGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTG 31123
Query 171366 CTGCTCATGGATACTTCGGTAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTT 171425
| |||||||| ||||||||| | ||||| ||||| || || || || |||||||||||||
Sbjct 31122 CAGCTCATGGCTACTTCGGTCGTTTAATTTTCCAATACGCTTCTTTTAACAACTCTCGTT 31063
Query 171426 CATTACACTTCTTCCTCGCTGTATTCCCTGTAGTCTGTGTATGGTTAACCTCTATGGGTA 171485
||||||| |||||| | |||| | || || || || | ||||| || || | ||||
Sbjct 31062 CATTACATTTCTTCTTAGCTGCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGTA 31003
Query 171486 TCTGTACAATGGCATTCAACCTTAACGGATTCAACTTCAACCAATCAGTTGTAGATGCAA 171545
| | || ||||| |||||| | || || ||||||||||||||||||||||||||| ||
Sbjct 31002 TTTCAACTATGGCTTTCAACTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCAC 30943
Query 171546 ACGGAAAGATTGTACCAACATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAG 171605
| || || | || |||| || || | ||| | || |||||||| |||||||
Sbjct 30942 AAGGCCGTGTTATTAACACTTGGGCTGACATTATCAACCGTGCCAACCTTGGTATGGAAG 30883
Query 171606 TTATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGC 171648
| |||||||| | || || ||||||||||| |||| ||||
Sbjct 30882 TAATGCATGAGCGTAACGCTCACAACTTCCCGTTAGATTTAGC 30840
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570243137904000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |