Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq3244 104 2e-17 seq3190 95.1 1e-14 seq538 95.1 1e-14 seq3143 86.0 6e-12 >seq3244 Length=4747 Score = 104 bits (114), Expect = 2e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || |||| |||||||| | || | ||| |||||||| || |||||||| ||| Sbjct 3240 GCCTCCTCGCAGGCGCAGCACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCGGC 3181 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| ||||| ||||||||||| || |||| | ||||||||| || || || Sbjct 3180 CAGCGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAGATGAGACGCTGCTGATCGGGGGG 3121 Query 131127 GATTCCTTCTTTGTC 131141 ||| ||||||||||| Sbjct 3120 GATGCCTTCTTTGTC 3106 Score = 96.9 bits (106), Expect = 3e-15 Identities = 112/150 (75%), Gaps = 1/150 (1%) Strand=Plus/Minus Query 130993 CACTTTCACCATGA-GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTG 131051 ||| || | ||| | ||| || |||| |||||||| | || | ||| |||||||| || Sbjct 3707 CACCTTGATCATCATGCCGCCTCGCAGGCGCAGCACCAGGTGCAAGGTGGACTCCTTCTG 3648 Query 131052 AATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACG 131111 |||||||| ||| || ||||| ||||| ||||||||||| || |||| | || Sbjct 3647 GATGTTGTAGTCGGCCAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATGAGGCG 3588 Query 131112 CTGCTGGTCCGGAGGGATTCCTTCTTTGTC 131141 |||||| || || ||||| || |||||||| Sbjct 3587 CTGCTGATCGGGGGGGATGCCCTCTTTGTC 3558 >seq3190 Length=33988 Score = 95.1 bits (104), Expect = 1e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| |||||||| | || | ||| |||||||| || ||||||||||| Sbjct 17053 GCCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCAGC 16994 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| ||||| ||||||||||| || |||| | ||||||||||| || || Sbjct 16993 CAGCGTGCGGCCATCCTCAAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCAGGGGG 16934 Query 131127 GATTCCT 131133 ||| ||| Sbjct 16933 GATGCCT 16927 >seq538 Length=19016 Score = 95.1 bits (104), Expect = 1e-14 Identities = 122/166 (73%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 46146 TTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTT 46205 |||| | ||||| || | || ||||| ||||||||| |||| || || ||| || Sbjct 16711 TTTCTCAGAGCGCCTGATTGCGTTTGCTTGCGTGGAGGGCATCTTCTTCTCCGGCTCCTT 16770 Query 46206 TGCCGCCATCTTTTACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACG 46264 | ||||||| | |||| || | ||||| ||||||||||||| || ||| |||| Sbjct 16771 CTGCTCCATCTTCTGGCTCAAGAAGCGAGGGC-TCATGCCCGGCCTCACCTTTTCAAACG 16829 Query 46265 AGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCT 46310 |||| || || || ||||| |||||||| || |||||||| || || Sbjct 16830 AGCTCATTTCTCGTGACGAAGGCCTGCACACAGACTTTGCATGCCT 16875 >seq3143 Length=13185 Score = 86.0 bits (94), Expect = 6e-12 Identities = 99/132 (75%), Gaps = 1/132 (1%) Strand=Plus/Minus Query 131003 ATGA-GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAA 131061 |||| ||| ||||||| |||| ||| | || | || |||||||| || |||||||| Sbjct 7127 ATGATGCCTCCGCGCAGGCGCAACACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAG 7068 Query 131062 TCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCC 131121 || || ||||| |||||| ||||||||||| || |||| | ||||||||||| Sbjct 7067 TCCGCCAGTGTGCGGCCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCA 7008 Query 131122 GGAGGGATTCCT 131133 || ||||| ||| Sbjct 7007 GGGGGGATGCCT 6996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471991559424000