Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05]
3,600 sequences; 37,342,230 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq3244 104 2e-17
seq3190 95.1 1e-14
seq538 95.1 1e-14
seq3143 86.0 6e-12
>seq3244
Length=4747
Score = 104 bits (114), Expect = 2e-17
Identities = 104/135 (77%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066
||| || |||| |||||||| | || | ||| |||||||| || |||||||| |||
Sbjct 3240 GCCTCCTCGCAGGCGCAGCACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCGGC 3181
Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126
|| ||||| ||||| ||||||||||| || |||| | ||||||||| || || ||
Sbjct 3180 CAGCGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAGATGAGACGCTGCTGATCGGGGGG 3121
Query 131127 GATTCCTTCTTTGTC 131141
||| |||||||||||
Sbjct 3120 GATGCCTTCTTTGTC 3106
Score = 96.9 bits (106), Expect = 3e-15
Identities = 112/150 (75%), Gaps = 1/150 (1%)
Strand=Plus/Minus
Query 130993 CACTTTCACCATGA-GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTG 131051
||| || | ||| | ||| || |||| |||||||| | || | ||| |||||||| ||
Sbjct 3707 CACCTTGATCATCATGCCGCCTCGCAGGCGCAGCACCAGGTGCAAGGTGGACTCCTTCTG 3648
Query 131052 AATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACG 131111
|||||||| ||| || ||||| ||||| ||||||||||| || |||| | ||
Sbjct 3647 GATGTTGTAGTCGGCCAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATGAGGCG 3588
Query 131112 CTGCTGGTCCGGAGGGATTCCTTCTTTGTC 131141
|||||| || || ||||| || ||||||||
Sbjct 3587 CTGCTGATCGGGGGGGATGCCCTCTTTGTC 3558
>seq3190
Length=33988
Score = 95.1 bits (104), Expect = 1e-14
Identities = 97/127 (76%), Gaps = 0/127 (0%)
Strand=Plus/Minus
Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066
|||||| |||| |||||||| | || | ||| |||||||| || |||||||||||
Sbjct 17053 GCCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCAGC 16994
Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126
|| ||||| ||||| ||||||||||| || |||| | ||||||||||| || ||
Sbjct 16993 CAGCGTGCGGCCATCCTCAAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCAGGGGG 16934
Query 131127 GATTCCT 131133
||| |||
Sbjct 16933 GATGCCT 16927
>seq538
Length=19016
Score = 95.1 bits (104), Expect = 1e-14
Identities = 122/166 (73%), Gaps = 2/166 (1%)
Strand=Plus/Plus
Query 46146 TTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTT 46205
|||| | ||||| || | || ||||| ||||||||| |||| || || ||| ||
Sbjct 16711 TTTCTCAGAGCGCCTGATTGCGTTTGCTTGCGTGGAGGGCATCTTCTTCTCCGGCTCCTT 16770
Query 46206 TGCCGCCATCTTTTACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACG 46264
| ||||||| | |||| || | ||||| ||||||||||||| || ||| ||||
Sbjct 16771 CTGCTCCATCTTCTGGCTCAAGAAGCGAGGGC-TCATGCCCGGCCTCACCTTTTCAAACG 16829
Query 46265 AGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCT 46310
|||| || || || ||||| |||||||| || |||||||| || ||
Sbjct 16830 AGCTCATTTCTCGTGACGAAGGCCTGCACACAGACTTTGCATGCCT 16875
>seq3143
Length=13185
Score = 86.0 bits (94), Expect = 6e-12
Identities = 99/132 (75%), Gaps = 1/132 (1%)
Strand=Plus/Minus
Query 131003 ATGA-GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAA 131061
|||| ||| ||||||| |||| ||| | || | || |||||||| || ||||||||
Sbjct 7127 ATGATGCCTCCGCGCAGGCGCAACACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAG 7068
Query 131062 TCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCC 131121
|| || ||||| |||||| ||||||||||| || |||| | |||||||||||
Sbjct 7067 TCCGCCAGTGTGCGGCCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCA 7008
Query 131122 GGAGGGATTCCT 131133
|| ||||| |||
Sbjct 7007 GGGGGGATGCCT 6996
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 471991559424000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |