Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq625 214 4e-50 seq3285 114 3e-20 seq2320 114 3e-20 seq538 95.1 2e-14 >seq625 Length=19960 Score = 214 bits (236), Expect = 4e-50 Identities = 253/343 (74%), Gaps = 0/343 (0%) Strand=Plus/Minus Query 279711 GGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGATGTCCTA 279770 ||||| |||||||||||||||||||| | |||||||| || || ||||| || | Sbjct 10426 GGTGGCTGGAAGATGAAGCTGGCCCTGGCCCGCGCCATGCTCATGAACGCCGACATCATG 10367 Query 279771 CTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGTGTCCTAC 279830 |||| |||||||| |||||||| |||||||||||||||| |||||||| | |||| Sbjct 10366 TTGCTGGATGAGCCTACCAACCATTTGGACACCACCAACGTGGCCTGGCTGATTGACTAC 10307 Query 279831 CTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTTCCTAGAT 279890 || | || ||| || | ||| | ||||||| ||||||||||||||||| || Sbjct 10306 CTGGTTGGCCTCAAGGGCGTCACCTCCGTGGTTGTCTCGCACGACTCTGGCTTCCTCGAC 10247 Query 279891 GCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGCTCTCCAAGCACATCGGC 279950 |||| ||||| ||||||| ||||| ||| | || | ||||| ||| || | ||| Sbjct 10246 TCCGTCTGCTCCTCCATCATCCACTACGAGGACAACTTCAAGCTGAAGAAGTACCTGGGC 10187 Query 279951 AACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCCTACTATGACCTGAAGGAC 280010 |||||||| || ||| ||||||||||||| ||||| ||||| ||||| ||| Sbjct 10186 AACCTGTCCAAGTTTGTGCAGCAGCGCCCTGAGGCCGCCGCATACTACAACCTGGCTGAC 10127 Query 280011 GCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAGG 280053 || || ||||||||| | || ||||| || | ||||||| Sbjct 10126 GCGTCCACCAAGTGGGTGCTGCCAGAGCCCGGATACCTGGAGG 10084 Score = 190 bits (210), Expect = 4e-43 Identities = 259/360 (72%), Gaps = 6/360 (2%) Strand=Plus/Minus Query 280478 CCGCAGGAAGCTAAAGCGCTCCTATGAGTATGAGGTGTTCTGGAAGAATGAC---GAGAC 280534 |||| | ||||| |||||| ||| ||||| |||||| |||||| || ||||| Sbjct 9266 CCGCCGCAAGCTCAAGCGCGGCTACGAGTACGAGGTGCAGTGGAAGGGCGAGCTGGAGAC 9207 Query 280535 CTCAACTTGGATTGTCCGCGAGACCCTGGAGCAGCTTGGCTTCCAAAAGCTCCTCAATGA 280594 | | ||||| ||||| | |||||| || | |||||| ||| | || | || Sbjct 9206 C---AGCTGGATGACTCGCGACAGGCTGGAGGAGATGGGCTTCAGCAAGATGCTGACCGA 9150 Query 280595 CATCGACGCCAAGGATGCCGCTGCCAATGGTCTGCTAGGGAAACCTCTGACTGCCAAGAA 280654 ||||||| ||||| || || ||| || ||||| || || || ||||||||| || Sbjct 9149 CATCGACATGAAGGAGGCTGCCGCCGCCGGACTGCTGGGCAAGCCCCTGACTGCCCGCAA 9090 Query 280655 TGTTGAGGACCATATGACCAAGCTGGGTCTGGACCCCGAGTTTACAACTCACTCTCGCAT 280714 || ||||| ||| |||| ||||| ||| | ||||||| || || ||||| | || Sbjct 9089 CGTGGAGGAGATGATGGCCAACCTGGGCCTGCCCGCCGAGTTCACCACCCACTCCCAGAT 9030 Query 280715 TCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCAGCTCTGTGGCAACA 280774 ||||| || |||||||||||||||||||| || || | ||||| || ||||||| || Sbjct 9029 CCGCGGCCTGTCTGGAGGCCAGAAGGTCAAGCTGGTGCTGGGAGCCGCCATGTGGCAGCA 8970 Query 280775 CCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGAGAGCCTGGGCGC 280834 || ||| | | || || || ||||| |||||||| |||||||||||| |||||| || Sbjct 8969 GCCCCACATCCTGGTGCTGGATGAGCCCACCAACTACCTGGACCGCGAGTCCCTGGGTGC 8910 Score = 167 bits (184), Expect = 5e-36 Identities = 230/317 (73%), Gaps = 11/317 (3%) Strand=Plus/Minus Query 280051 AGGGCATCACATCAAAGGATCGCGCAATCATGAAGCTCCGTGGCGTCTCCTTTGCTTATC 280110 |||| | || || ||||| || || ||| ||||| | || |||||| ||| || | Sbjct 9900 AGGGTGTGACCTCCAAGGACCGTGCCATCCTGAAGATGCGCGGCGTCAACTTCAAGTA-C 9842 Query 280111 CCAATGGCCCCAA----CATCTTCAGCAGTGTCAACTCGCAGGTTTCTATGAACTCACGG 280166 |||| || | | || ||| || |||||| |||||| || | ||||| || Sbjct 9841 CCAACAGCGGAGAAGCACGTCCTCAACAACGTCAACGTGCAGGTCTCGCTCAACTCGCGC 9782 Query 280167 ATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGC 280226 || | || | |||||||| ||||| || ||||| |||| ||| | || ||||| Sbjct 9781 ATCGCGGTGCTGGGACCCAACGGTGCCGGCAAGTCCACCCAGATCCGTCTGCTCACTGGT 9722 Query 280227 GAGACCCAGGCCACTGAGG--GGTCCGTT-TGGAAGCATCCCAACATGCGGATGGCTTAC 280283 ||| |||| |||| |||| | | |||||||| |||||| ||||| | || ||| Sbjct 9721 GAGCTGGAGGC---TGAGTCTGGTCTGGTGTGGAAGCACCCCAACCTGCGGGTCGCCTAC 9665 Query 280284 GTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATAC 280343 || || |||||||| ||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 9664 GTGGCGCAGCACGCCTTCCACCACATCGAGAACCACCTGGACATGACTCCCAACCAGTAC 9605 Query 280344 ATTCAGTGGCGCTATGC 280360 || |||||||| || || Sbjct 9604 ATCCAGTGGCGGTACGC 9588 Score = 107 bits (118), Expect = 4e-18 Identities = 223/327 (68%), Gaps = 4/327 (1%) Strand=Plus/Minus Query 278645 CCTCCCCGAAATTGTTCCTATGTTGTCGGAGTGCATGGTAGATCTCCGCCCTTCGGTGAA 278704 ||| ||||| ||||| || || || | | |||||||| || || || | ||| Sbjct 12602 CCTGCCCGAGATTGTGCCAGTGGTGACCAACTGCATGGTTGACCTGAAGCCAACCGTGCG 12543 Query 278705 GGTAGCTGCAAA-GACTGCTCTCATCAAGTGTTGTGCGTCCATCGGCAACAAGGACATCG 278763 | || || | ||| || |||| |||||| || | |||| |||||| ||||| | Sbjct 12542 CGCGGCCGCCACCGAC-GCGCTCACCAAGTGCTGCACTGCCATTGGCAACCGCGACATTG 12484 Query 278764 AACCATTCATTGCCCATCTGATC-GCTGCAATCTCTGATAGCAGTCAGGTCCCGGAATGC 278822 | || || | ||||||| ||| |||||| || | | | |||| || || ||| Sbjct 12483 AGCCCTTTGTGCCCCATCTCATCCGCTGCA-TCGGCGCACCCGGCGAGGTGCCCGACTGC 12425 Query 278823 GTCCATCAGCTATCTGCAACCACATTCGTCCAGACCGTTGATGCTCGCACTCTTGCTGTC 278882 || || |||| || || || || || || |||| ||| ||||| ||||| || | || Sbjct 12424 GTGCACAAGCTGTCGGCGACGACCTTTGTGCAGAGCGTGGATGCCCGCACCCTGTCCATC 12365 Query 278883 CTGGTACCTCTGCTATGCCGTGGTATTGTGGACCGCACTACCGTGGTGCGCCGCAAGACC 278942 ||||| || ||||| || || | |||||||| ||| | ||||||||| || Sbjct 12364 CTGGTGCCGCTGCTTGTGCGCGGCCTGACCGACCGCACCACCCCCATCCGCCGCAAGGCC 12305 Query 278943 TGTGTCATCATCAACAACATGGCCAAG 278969 || ||||||||| ||||||||||||| Sbjct 12304 TGCGTCATCATCCGCAACATGGCCAAG 12278 >seq3285 Length=63365 Score = 114 bits (126), Expect = 3e-20 Identities = 69/73 (95%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 63245 GCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 63186 Query 142564 CCCACATCGGGCA 142576 ||||||||||||| Sbjct 63185 CCCACATCGGGCA 63173 >seq2320 Length=33852 Score = 114 bits (126), Expect = 3e-20 Identities = 69/73 (95%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 73 GCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 14 Query 142564 CCCACATCGGGCA 142576 ||||||||||||| Sbjct 13 CCCACATCGGGCA 1 >seq538 Length=19016 Score = 95.1 bits (104), Expect = 2e-14 Identities = 140/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 251587 AGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATGGCCA 251646 || ||||| | ||||| |||| |||||||| | |||||||||||||| | ||| Sbjct 17300 AGCGAGATCATGTCCATCCAGTCAAAGGGGTTGGCCATGTTGTACTGCTTGGGGTTGCCC 17241 Query 251647 AGTGCTACGAAGATGCGGTCTGCCACA-AACTCCAGATACTGTCCCATCAGTTCAGAGTT 251705 || || || | | ||||| | |||| ||||| | ||||| |||||||| | ||| Sbjct 17240 AGCGCCACTAGCAGCCGGTCCG-CACAGAACTCAATGTACTGCCCCATCAGCACCTTGTT 17182 Query 251706 CATGCCAATCATA-CGACAAGGAATTGCCTCACAGATGAATTCCTTTTCGTTGGCAACTG 251764 |||||| |||| | | || || | || |||||||| || ||||| ||| ||||||| | Sbjct 17181 CATGCCGATCAAATCCAC-GGGCAGCGCGTCACAGATAAACTCCTTCTCGATGGCAACCG 17123 Query 251765 CCTCCTCCACAAT 251777 |||| |||||| Sbjct 17122 CCTCACTCACAAT 17110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027789391027600