Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq538 122 2e-22 seq326 120 6e-22 seq3285 105 1e-17 seq3398 102 2e-16 >seq538 Length=19016 Score = 122 bits (134), Expect = 2e-22 Identities = 127/164 (77%), Gaps = 2/164 (1%) Strand=Plus/Plus Query 42699 GAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCC 42758 ||| | ||| | || ||| | ||| ||||||||||||||||| ||| ||||| |||| Sbjct 16718 GAGCGCCTGATTGCGTTTGCTTGCGTGGAGGGCATCTTCTTCTCCGGCTCCTTCTGCTCC 16777 Query 42759 ATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCAT 42817 ||||||||||||||| || ||| || |||||||| |||||||| || ||||| ||||| Sbjct 16778 ATCTTCTGGCTCAAGAAGCGAGGGCTC-ATGCCCGGCCTCACCTTTTCAAACGAGCTCAT 16836 Query 42818 CAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGT 42861 | ||||| || ||||| | |||||||| ||||| |||| Sbjct 16837 TTCTCGTGACGAAGGCCTGCACACAGACTTTGCATGCCTGCTGT 16880 >seq326 Length=80286 Score = 120 bits (132), Expect = 6e-22 Identities = 182/257 (71%), Gaps = 4/257 (2%) Strand=Plus/Plus Query 244739 GTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAG 244798 ||||| ||||| ||||||||||||||| || ||| || ||||||||| |||| Sbjct 58612 GTGCACAGGTTGGACGACTTGATGGTGCCCAAGTTCTGCTGGTTGGACTTGCGGTTGGCA 58671 Query 244799 GCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTC 244858 | ||||||||| ||||||||||| || ||||| | |||||| | || || | Sbjct 58672 GAGTCCTTGTAAAGCATGAAGGGGTTGCCCGTCTCCACCTGGGCCTCCAGCACTGCAAAC 58731 Query 244859 CAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTAC 244918 || || | | ||||||| | |||| ||| |||||| |||||| || ||| Sbjct 58732 CACAGCTGCTGCGCCTTGATGACCTTGCGGGCCCGGCCCTCGCTCTCGTACTTGGCATAC 58791 Query 244919 AGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGG--GGCACGACGCCGGGCACA 244976 |||||||| ||||||||||||||| ||| | || |||| | | || | ||||| | Sbjct 58792 AGGGCCTCAAACTCGGGGCCCCAGCAGTCGGCCAGCCCGGGTGCCTCGTTG--GGGCAGA 58849 Query 244977 TGAGACTCCACTCGCCG 244993 || |||||||||||| Sbjct 58850 ACAGGCTCCACTCGCCG 58866 Score = 89.7 bits (98), Expect = 1e-12 Identities = 83/104 (80%), Gaps = 6/104 (6%) Strand=Plus/Plus Query 244494 CCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCG---CATGGCTTCGGGCA 244550 |||||||||| | |||||||||| ||| ||| |||||||||| | || ||| || Sbjct 58134 CCTGCACGCCCAGCCCGATGGGTCGGTGCCGCATGTTGGAGCGGCGCGCGGTTTC---CA 58190 Query 244551 CGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTG 244594 | ||||| |||||| |||| || | ||||||||||||||||||| Sbjct 58191 CCGGGTAGAAGTTGACGTCAATGATCTTGTTGAGGTTGCGGGTG 58234 >seq3285 Length=63365 Score = 105 bits (116), Expect = 1e-17 Identities = 202/293 (69%), Gaps = 5/293 (2%) Strand=Plus/Plus Query 42485 AGAGGTGCAGTACTTTGAGGCGCGCTGCTT-CTACGGCTTCCAGATAGCCATAGAGAACG 42543 |||||| ||| | || ||||| ||||| ||| | |||||||| || || ||| | Sbjct 18562 AGAGGTCCAGATCCCCGAAGCGCG-TGCTTTCTATGCCTTCCAGAGCGCAATCGAGGCGG 18620 Query 42544 TGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTA 42603 ||||| ||| |||||| | ||||| | ||| |||| || || || |||| Sbjct 18621 TGCACAGCGAGATGTACGGCCTGCTGCTGGAGCAGTATATCCGTGACCCAGTGCAGCGGG 18680 Query 42604 ACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGC 42663 || ||| ||| | || |||| || || |||||| | ||||||||||| | |||||| Sbjct 18681 ACATGCTCTTCCACGCGGTGGACACCATTCCCTGCGTACAGAAGAAGGCGCAGTGGGCGA 18740 Query 42664 TCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCG 42723 | || ||||| ||||| | | || | || | ||| |||| || |||| | | Sbjct 18741 TGAAGTGGATAGAGAG--CAGCAGCTGC-TTTGCAGAGCGGCTTGTCGCCTACGCGTGTG 18797 Query 42724 TCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG 42776 | ||||||||| |||||| ||| | ||| ||| ||||||||||| ||| || Sbjct 18798 TGGAGGGCATCCACTTCTCTGGCTCTTTCTGCTCGATCTTCTGGCTGAAGAAG 18850 >seq3398 Length=70900 Score = 102 bits (112), Expect = 2e-16 Identities = 155/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 242838 CGGGGCGCCCTGATCATCCTGGAAGGCGTCGATCGTTCGGGTAAGTCGACGCAGTGTCGC 242897 || |||||| | ||| | | || |||| ||| | | || ||| ||||| || | Sbjct 1220 CGTGGCGCCTTCATCGTGTTAGAGGGCGCCGACAGGGCAGGCAAGAGCACGCAATGCCAG 1279 Query 242898 ATGCTGGTCAAGGCCCTGCTGGAGATGGGAGTCGAGGCCGAGCTGATGAGGTTCCCGGAC 242957 ||||||||| | |||| || | ||| |||| ||| |||||| | ||||||| ||| Sbjct 1280 ATGCTGGTCGAACACCTGACGGCTAAGGGCGTCGCGGCGGAGCTGTGGCGGTTCCCTGAC 1339 Query 242958 AGGACCACTCCGATCGGACAGATGATCAACTCGTACCTGCTCAACAAGAGCGATCTGGAC 243017 | || ||| | |||| | ||||||||||| ||||| || | ||||||| | ||| Sbjct 1340 CGAACTACTGCCGTCGGCAAAATGATCAACTCATACCTCACCAGCCAGAGCGAGATTGAC 1399 Query 243018 GATCACGTCGTACACCTCCTGTTCTCGGCCAACCGATGGGA 243058 ||| | || |||||||| || || |||||||| ||||| Sbjct 1400 GATGCAGCTGTGCACCTCCTCTTTTCAGCCAACCGCTGGGA 1440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944296704736000