Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05]
3,600 sequences; 37,342,230 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq538 122 2e-22
seq326 120 6e-22
seq3285 105 1e-17
seq3398 102 2e-16
>seq538
Length=19016
Score = 122 bits (134), Expect = 2e-22
Identities = 127/164 (77%), Gaps = 2/164 (1%)
Strand=Plus/Plus
Query 42699 GAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCC 42758
||| | ||| | || ||| | ||| ||||||||||||||||| ||| ||||| ||||
Sbjct 16718 GAGCGCCTGATTGCGTTTGCTTGCGTGGAGGGCATCTTCTTCTCCGGCTCCTTCTGCTCC 16777
Query 42759 ATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCAT 42817
||||||||||||||| || ||| || |||||||| |||||||| || ||||| |||||
Sbjct 16778 ATCTTCTGGCTCAAGAAGCGAGGGCTC-ATGCCCGGCCTCACCTTTTCAAACGAGCTCAT 16836
Query 42818 CAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGT 42861
| ||||| || ||||| | |||||||| ||||| ||||
Sbjct 16837 TTCTCGTGACGAAGGCCTGCACACAGACTTTGCATGCCTGCTGT 16880
>seq326
Length=80286
Score = 120 bits (132), Expect = 6e-22
Identities = 182/257 (71%), Gaps = 4/257 (2%)
Strand=Plus/Plus
Query 244739 GTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAG 244798
||||| ||||| ||||||||||||||| || ||| || ||||||||| ||||
Sbjct 58612 GTGCACAGGTTGGACGACTTGATGGTGCCCAAGTTCTGCTGGTTGGACTTGCGGTTGGCA 58671
Query 244799 GCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTC 244858
| ||||||||| ||||||||||| || ||||| | |||||| | || || |
Sbjct 58672 GAGTCCTTGTAAAGCATGAAGGGGTTGCCCGTCTCCACCTGGGCCTCCAGCACTGCAAAC 58731
Query 244859 CAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTAC 244918
|| || | | ||||||| | |||| ||| |||||| |||||| || |||
Sbjct 58732 CACAGCTGCTGCGCCTTGATGACCTTGCGGGCCCGGCCCTCGCTCTCGTACTTGGCATAC 58791
Query 244919 AGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGG--GGCACGACGCCGGGCACA 244976
|||||||| ||||||||||||||| ||| | || |||| | | || | ||||| |
Sbjct 58792 AGGGCCTCAAACTCGGGGCCCCAGCAGTCGGCCAGCCCGGGTGCCTCGTTG--GGGCAGA 58849
Query 244977 TGAGACTCCACTCGCCG 244993
|| ||||||||||||
Sbjct 58850 ACAGGCTCCACTCGCCG 58866
Score = 89.7 bits (98), Expect = 1e-12
Identities = 83/104 (80%), Gaps = 6/104 (6%)
Strand=Plus/Plus
Query 244494 CCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCG---CATGGCTTCGGGCA 244550
|||||||||| | |||||||||| ||| ||| |||||||||| | || ||| ||
Sbjct 58134 CCTGCACGCCCAGCCCGATGGGTCGGTGCCGCATGTTGGAGCGGCGCGCGGTTTC---CA 58190
Query 244551 CGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTG 244594
| ||||| |||||| |||| || | |||||||||||||||||||
Sbjct 58191 CCGGGTAGAAGTTGACGTCAATGATCTTGTTGAGGTTGCGGGTG 58234
>seq3285
Length=63365
Score = 105 bits (116), Expect = 1e-17
Identities = 202/293 (69%), Gaps = 5/293 (2%)
Strand=Plus/Plus
Query 42485 AGAGGTGCAGTACTTTGAGGCGCGCTGCTT-CTACGGCTTCCAGATAGCCATAGAGAACG 42543
|||||| ||| | || ||||| ||||| ||| | |||||||| || || ||| |
Sbjct 18562 AGAGGTCCAGATCCCCGAAGCGCG-TGCTTTCTATGCCTTCCAGAGCGCAATCGAGGCGG 18620
Query 42544 TGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTA 42603
||||| ||| |||||| | ||||| | ||| |||| || || || ||||
Sbjct 18621 TGCACAGCGAGATGTACGGCCTGCTGCTGGAGCAGTATATCCGTGACCCAGTGCAGCGGG 18680
Query 42604 ACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGC 42663
|| ||| ||| | || |||| || || |||||| | ||||||||||| | ||||||
Sbjct 18681 ACATGCTCTTCCACGCGGTGGACACCATTCCCTGCGTACAGAAGAAGGCGCAGTGGGCGA 18740
Query 42664 TCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCG 42723
| || ||||| ||||| | | || | || | ||| |||| || |||| | |
Sbjct 18741 TGAAGTGGATAGAGAG--CAGCAGCTGC-TTTGCAGAGCGGCTTGTCGCCTACGCGTGTG 18797
Query 42724 TCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG 42776
| ||||||||| |||||| ||| | ||| ||| ||||||||||| ||| ||
Sbjct 18798 TGGAGGGCATCCACTTCTCTGGCTCTTTCTGCTCGATCTTCTGGCTGAAGAAG 18850
>seq3398
Length=70900
Score = 102 bits (112), Expect = 2e-16
Identities = 155/221 (70%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 242838 CGGGGCGCCCTGATCATCCTGGAAGGCGTCGATCGTTCGGGTAAGTCGACGCAGTGTCGC 242897
|| |||||| | ||| | | || |||| ||| | | || ||| ||||| || |
Sbjct 1220 CGTGGCGCCTTCATCGTGTTAGAGGGCGCCGACAGGGCAGGCAAGAGCACGCAATGCCAG 1279
Query 242898 ATGCTGGTCAAGGCCCTGCTGGAGATGGGAGTCGAGGCCGAGCTGATGAGGTTCCCGGAC 242957
||||||||| | |||| || | ||| |||| ||| |||||| | ||||||| |||
Sbjct 1280 ATGCTGGTCGAACACCTGACGGCTAAGGGCGTCGCGGCGGAGCTGTGGCGGTTCCCTGAC 1339
Query 242958 AGGACCACTCCGATCGGACAGATGATCAACTCGTACCTGCTCAACAAGAGCGATCTGGAC 243017
| || ||| | |||| | ||||||||||| ||||| || | ||||||| | |||
Sbjct 1340 CGAACTACTGCCGTCGGCAAAATGATCAACTCATACCTCACCAGCCAGAGCGAGATTGAC 1399
Query 243018 GATCACGTCGTACACCTCCTGTTCTCGGCCAACCGATGGGA 243058
||| | || |||||||| || || |||||||| |||||
Sbjct 1400 GATGCAGCTGTGCACCTCCTCTTTTCAGCCAACCGCTGGGA 1440
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944296704736000
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