Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq625 167 5e-36 seq250 127 5e-24 seq75 114 3e-20 >seq625 Length=19960 Score = 167 bits (184), Expect = 5e-36 Identities = 244/345 (71%), Gaps = 0/345 (0%) Strand=Plus/Plus Query 333643 CCTCGAGGAACCCGGGCTCGGGGAACTTCCACGTGGTCTTCGTCTCGGTAAGGGCGTAGT 333702 |||| ||| | |||||||| || | | |||| |||| || || | ||| ||||| Sbjct 10084 CCTCCAGGTATCCGGGCTCTGGCAGCACCCACTTGGTGGACGCGTCAGCCAGGTTGTAGT 10143 Query 333703 AACTCGCTGATTCGGGACGCTTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCA 333762 | || | || || |||| || ||| |||| |||||| || ||| ||||||||||| Sbjct 10144 ATGCGGCGGCCTCAGGGCGCTGCTGCACAAACTTGGACAGGTTGCCCAGGTACTTCTTCA 10203 Query 333763 GCTTTAGGTTAGGTTCGTAATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGT 333822 |||| | ||| ||||| ||||| || |||| ||| || | ||||||||| || |||| Sbjct 10204 GCTTGAAGTTGTCCTCGTAGTGGATGATGGAGGAGCAGACGGAGTCGAGGAAGCCAGAGT 10263 Query 333823 CGTGTGACACAATCACGCACGAAACGTCCTTAAGGTTGATCAGGTATTCAATCAGCCACC 333882 |||| || |||| |||| | | ||| |||| ||| | |||||| ||||||||||| Sbjct 10264 CGTGCGAGACAACCACGGAGGTGACGCCCTTGAGGCCAACCAGGTAGTCAATCAGCCAGG 10323 Query 333883 TCACGTTAGACACAGAAAGATGGTTGGTCGGCTCGTCAAGAAGTAGTAGCTTTGCGTTCA 333942 |||||| | | ||||||||| ||||| || || | | | | ||||||| Sbjct 10324 CCACGTTGGTGGTGTCCAAATGGTTGGTAGGCTCATCCAGCAACATGATGTCGGCGTTCA 10383 Query 333943 GGAGCATTGCACGTGCAAGAGCGAGTTTCATTTTCCACCCTCCTG 333987 |||||| || || || || || || ||||| ||||| || |||| Sbjct 10384 TGAGCATGGCGCGGGCCAGGGCCAGCTTCATCTTCCAGCCACCTG 10428 Score = 147 bits (162), Expect = 5e-30 Identities = 228/326 (70%), Gaps = 0/326 (0%) Strand=Plus/Plus Query 333320 GTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGATGATC 333379 |||||| |||| ||| || ||||| ||||| ||||||||||| |||||||| || || | Sbjct 9575 GTCTTCGCCGGTGGCGTACCGCCACTGGATGTACTGGTTGGGAGTCATGTCCAGGTGGTT 9634 Query 333380 CTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCA 333439 ||||||||||||||| || ||||| |||||||| || | |||| || || |||||||| Sbjct 9635 CTCGATGTGGTGGAAGGCGTGCTGCGCCACGTAGGCGACCCGCAGGTTGGGGTGCTTCCA 9694 Query 333440 AACACTTCCGTTGGTGGCTTCCATTTGCCCCGTGAGCACCTTAATGAGAGTGCTTTTTCC 333499 || || || |||| | || ||||||| || | ||| || || Sbjct 9695 CACCAGACCAGACTCAGCCTCCAGCTCACCAGTGAGCAGACGGATCTGGGTGGACTTGCC 9754 Query 333500 CGCACCATTTTCGCCTACCACACCAATCCTGGAGTTCAGCGATACCTGGGCATTCACGTT 333559 ||||| || || | ||| | || | ||||| ||||| ||||| | || ||||| Sbjct 9755 GGCACCGTTGGGTCCCAGCACCGCGATGCGCGAGTTGAGCGAGACCTGCACGTTGACGTT 9814 Query 333560 GTCAAAGATTAGTTTTTCCGTACCCGGATACTTGAACCCCACACCGCGTAGCTTCATGAT 333619 || | || | || |||| || |||||||| || ||||| | ||||| ||| Sbjct 9815 GTTGAGGACGTGCTTCTCCGCTGTTGGGTACTTGAAGTTGACGCCGCGCATCTTCAGGAT 9874 Query 333620 GGCACGGTCCTTCGAAGTGATACCCT 333645 |||||||||||| || || | ||||| Sbjct 9875 GGCACGGTCCTTGGAGGTCACACCCT 9900 Score = 118 bits (130), Expect = 2e-21 Identities = 281/423 (66%), Gaps = 9/423 (2%) Strand=Plus/Plus Query 332837 CTTAAGTGCTTCGGCCATTGCTCCGAGACTCTCACGGTCAACGAAGTTGGTCGGTTCGTC 332896 ||| || ||| ||||||| || || || ||| ||||| | | ||||||| || || || Sbjct 8891 CTTGAGGGCTGCGGCCATGGCACCCAGGGACTCGCGGTCCAGGTAGTTGGTGGGCTCATC 8950 Query 332897 CAAAACGATCACGTGGGGTTGTTGCCATAGAGCAGCGCCGATAACCAATTTCAGCTTTTG 332956 || || | | |||||| || ||||| | || || || | |||| || | ||| || Sbjct 8951 CAGCACCAGGATGTGGGGCTGCTGCCACATGGCGGCTCCCAGCACCAGCTTGACCTTCTG 9010 Query 332957 CCCGCCAGATAGACCACGAATGCGAGAATGAGTTGTAAATTCAGGGTCGAGACCAACATT 333016 || ||||| || || || || | || || || || || || | | || || | || Sbjct 9011 GCCTCCAGACAGGCCGCGGATCTGGGAGTGGGTGGTGAACTCGGCGGGCAGGCCCAGGTT 9070 Query 333017 TGCCATATGTTCTTCCACGTTCTTTGCGGTCAGTGGCTTG---AACATACCGTTTGCGAC 333073 ||||| || |||||||| || ||||| |||||| | || ||| ||| | Sbjct 9071 GGCCATCATCTCCTCCACGTTGCGGGCAGTCAGGGGCTTGCCCAGCAGTCCGGCGGCGGC 9130 Query 333074 GGCTTCTTTGGTGTCAATGTCGTTCAGAAGTTTTCCGAAACCATACTCCTCGAGGCGTTC 333133 || || || |||| |||||| |||| | || | ||| || |||||| || | || Sbjct 9131 AGCCTCCTTCATGTCGATGTCGGTCAGCATCTTGCTGAAGCCCATCTCCTCCAGCCTGTC 9190 Query 333134 GCGAGATATCCATTGGGTAGTCTCA---TCGTTTTTCCACTGAACCTCGTACTCGTAAGA 333190 ||||| ||||| | | ||||| ||| |||||||| |||||||||||||| Sbjct 9191 GCGAGTCATCCA---GCTGGTCTCCAGCTCGCCCTTCCACTGCACCTCGTACTCGTAGCC 9247 Query 333191 TTTTTTCAGCTTGCGGCGACCAAGAATCTTGTCAAGAATTTTCTTCACTCCGTCAACGAC 333250 || ||||||||||| || | |||||||| | ||| || ||||| || || Sbjct 9248 GCGCTTGAGCTTGCGGCGGGACAGCAGCTTGTCAACCACGCGCTTGACGCCGTCCACCAC 9307 Query 333251 TTT 333253 || Sbjct 9308 CTT 9310 Score = 114 bits (126), Expect = 3e-20 Identities = 223/329 (68%), Gaps = 3/329 (1%) Strand=Plus/Plus Query 334725 TTCGCCATGTTCCGGATGATAACACACGTCTTACGCCGAACGGGGGTGGTGCGATCGGCA 334784 || |||||||| |||||||| || || | ||| || || | |||||||||||| |||| Sbjct 12279 TTGGCCATGTTGCGGATGATGACGCAGGCCTTGCGGCGGATGGGGGTGGTGCGGTCGGTC 12338 Query 334785 AGCCCGCGGACGAGTAGCGGGGTCAGGATAGACAGGGTCTTCGCGTCGACCGACTGGACG 334844 || ||||| || || ||||| |||||| |||||||| || || || ||| || Sbjct 12339 AGGCCGCGCACAAGCAGCGGCACCAGGATGGACAGGGTGCGGGCATCCACGCTCTGCACA 12398 Query 334845 AACGTGGTCGCAGATAGGTTGTGGACACACTCGGGGACGTCCTGAGGAGAACCAATGCTC 334904 || || ||||| || || ||||| || || ||||| || || || | || |||| Sbjct 12399 AAGGTCGTCGCCGACAGCTTGTGCACGCAGTCGGGCACCTCGCCGGGTGCGCCGATGCAG 12458 Query 334905 TTCACAAGATGGGGAATGAAGGGTTCGATGTCTTTGTTATCAATTTGA---CAACACGCG 334961 | |||||||| | ||||| || ||||| ||| |||| | || ||| | Sbjct 12459 CGGATGAGATGGGGCACAAAGGGCTCAATGTCGCGGTTGCCAATGGCAGTGCAGCACTTG 12518 Query 334962 ATAAGAGCCTTCGTGGCACTATCCTTTACCACTTGCTTCAGGTCAAGCATACAATCTGTC 335021 | || || | ||||| | || | |||||||||||| ||| || | ||| Sbjct 12519 GTGAGCGCGTCGGTGGCGGCCGCGCGCACGGTTGGCTTCAGGTCAACCATGCAGTTGGTC 12578 Query 335022 ACCACCGGTACGATTTCGGGAAGGTAGAC 335050 ||||| || || || ||||| ||||| || Sbjct 12579 ACCACTGGCACAATCTCGGGCAGGTACAC 12607 >seq250 Length=20030 Score = 127 bits (140), Expect = 5e-24 Identities = 203/289 (70%), Gaps = 2/289 (1%) Strand=Plus/Minus Query 37040 CCATGCGGACCGAGTTCCCAGGATACCGAATCATCACCGACATCGGTTCCGGAATCAACT 37099 |||||||| | || | |||||| || || || | |||||||| |||| |||||| Sbjct 19064 CCATGCGGGCAGAATACCCAGGCCACAAGCTCGTCTCGGACATCGGCAGCGGACTCAACT 19005 Query 37100 GGAAACGTAAGGGCCTTAAAACCATTTTGGAATCCGCGATGCACGGAACTTGCGGACGTG 37159 ||||| ||| || ||||| ||||||| || |||| |||| || | Sbjct 19004 TCAAACGCCCGGGTCTGCTTGCCATTCTGGAATCGGCAATGCGCGGAGAGGTCGAAGAAA 18945 Query 37160 TTGTGGTTGCCCACAGAGACCGTATCGCCCGTTTTGGCTTCGAACTCGTCGAGTGGATCC 37219 |||||||||||||||||||| | |||| ||||| | |||||||| |||||||||| | Sbjct 18944 TTGTGGTTGCCCACAGAGACAGGCTCGCGCGTTTCTCCATCGAACTCTTCGAGTGGATTC 18885 Query 37220 TTCGAGCCAACGGAGCCGACCTCGTGGTTCAACACAAAGACG-TGGACGCCTCACCGGCA 37278 | ||| |||||| | ||||||||||||||| | || ||||| | ||||| | Sbjct 18884 TACGAAAGCACGGAGTCAGGCTCGTGGTTCAACAC-GCGTCGTTGGACTCATCACCAGAG 18826 Query 37279 ACAGAGCTCGCAGAAGACATCATCGCAATCACCACTGTTTTCGCCTGCA 37327 |||| || | || ||| | ||||| | ||| || |||||||||| Sbjct 18825 GCAGAACTTGTCGAGGACCTGCTCGCAGTGGTCACCGTCTTCGCCTGCA 18777 >seq75 Length=7990 Score = 114 bits (126), Expect = 3e-20 Identities = 194/275 (71%), Gaps = 7/275 (3%) Strand=Plus/Minus Query 36976 AATTACTGTTACTGCAGGGTCAGTTCCGCAAAG--CAATACGATGACCTCGAACGACAGG 37033 |||| ||| |||||||| ||| | | | ||| ||| | | ||| | | || |||| Sbjct 3602 AATT-CTGCTACTGCAGAGTC--TCCAGGAAACACCAACAGCACGACTTGCAGCGGCAGG 3546 Query 37034 TCGAGTCCATGCG-GACCGAGTTCCCAGGATACCGAATCATCACCGACATCGGTTCCGGA 37092 |||||| |||||| || || ||||||| | || ||| |||| ||||||| ||| || Sbjct 3545 TCGAGTACATGCGCGAACGC-TTCCCAGAACACGAGATCGTCACGGACATCGCTTCAGGG 3487 Query 37093 ATCAACTGGAAACGTAAGGGCCTTAAAACCATTTTGGAATCCGCGATGCACGGAACTTGC 37152 ||||||| || || |||||||| | |||||| | | |||||||| ||||| | | Sbjct 3486 ATCAACTTCAAGCGAAAGGGCCTGCAGACCATTCTTCGACACGCGATGCTCGGAAATGTC 3427 Query 37153 GGACGTGTTGTGGTTGCCCACAGAGACCGTATCGCCCGTTTTGGCTTCGAACTCGTCGAG 37212 | |||||||||||| |||||||||| | || | | | || ||||| || Sbjct 3426 CAAGAGGTTGTGGTTGCCTACAGAGACCGCCTTGCAAGAATCGCGAGTGACCTCGTGGAA 3367 Query 37213 TGGATCCTTCGAGCCAACGGAGCCGACCTCGTGGT 37247 |||||||| | |||||||||| | |||||||| Sbjct 3366 TGGATCCTCACAAACAACGGAGCCAAACTCGTGGT 3332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102829129660000