Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq3285 116 4e-21 seq538 113 5e-20 seq326 86.0 7e-12 >seq3285 Length=63365 Score = 116 bits (128), Expect = 4e-21 Identities = 118/152 (78%), Gaps = 5/152 (3%) Strand=Plus/Minus Query 126104 CCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAG 126163 || |||||||| ||||||||||| |||||| |||| || || || || |||||| | Sbjct 18867 CCAGGCATGAGCTGCCGCTTCTTCAGCCAGAAGATCGAGCAGAAAGAGCCAGAGAAGTGG 18808 Query 126164 ATTCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGC-GCGACTTTGTGTC 126222 || ||||||||||||||| | || | || ||||| |||||| ||| || | | || Sbjct 18807 ATGCCCTCCACACACGCGTAGGCGACAAGCCGCTCTGCAAAGCAGCTGC----TGCTCTC 18752 Query 126223 AAACCACTTCATCGCCCACTGCGCCTTTTTCT 126254 | |||||||||||||||||||||||| |||| Sbjct 18751 TATCCACTTCATCGCCCACTGCGCCTTCTTCT 18720 >seq538 Length=19016 Score = 113 bits (124), Expect = 5e-20 Identities = 116/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 126047 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106 ||||| ||| ||| || || |||||||| || ||||| || || || ||| || || Sbjct 16869 GCAAAGTCTGTGTGCAGGCCTTCGTCACGAGAAATGAGCTCGTTTGAAAAGGTGAGGCCG 16810 Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 |||||||| || |||||||| | |||||| || | || || || || ||||||||||| Sbjct 16809 GGCATGAGCCCTCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCGGAGAAGAAGATG 16750 Query 126167 CCCTCCACACACGCGAACGCAAAGAGACGCTC 126198 |||||||| || || ||||||| || ||||| Sbjct 16749 CCCTCCACGCAAGCAAACGCAATCAGGCGCTC 16718 >seq326 Length=80286 Score = 86.0 bits (94), Expect = 7e-12 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 113941 ATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGA 114000 |||||| || | ||||| |||||||||||||| ||||| |||| ||| ||| |||| Sbjct 57207 ATAGATGTTTGATGTGTAAGGCTCAAAGCACTCGTTGTTGCCCAGGATCTGGCTGGTGCT 57266 Query 114001 GGCTGTGGGCATGGGTGCCATGAGAAG 114027 ||| |||||||||||||||| ||| || Sbjct 57267 GGCGGTGGGCATGGGTGCCACGAGCAG 57293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597326719088000