Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05]
3,600 sequences; 37,342,230 total letters
Query= NC_013085.1
Length=194454
Score E
Sequences producing significant alignments: (Bits) Value
seq2029 618 6e-172
>seq2029
Length=64692
Score = 618 bits (684), Expect = 6e-172
Identities = 759/1033 (73%), Gaps = 4/1033 (0%)
Strand=Plus/Plus
Query 6263 AGAGCGTTGCCTCTTGGCAATACTTCTTCAGGAAATACAAAGTTTTCATGTGGTTGATCC 6322
|||||||| || | ||| || || || ||||| ||||||| |||||||| || |||||
Sbjct 62366 AGAGCGTTTCCACGTGGTAAAACCTCCTCAGGGAATACAAGTTTTTCATGAGGCTGATCT 62425
Query 6323 ACTGGTGCCATCCAGGCACGTAGACCTTCATTCAATAGGATGTTCTTGGTATAGAACGTC 6382
| |||||||| ||||| | |||||| || || ||||| || ||||||||||| ||
Sbjct 62426 TGAGCAGCCATCCAAGCACGAATACCTTCGTTTAAAAGGATATTTTTGGTATAGAAAGTT 62485
Query 6383 TCGAACTCTGGATCCTCCGCTGCTCTGATCTCTTGTGAAACAAAGTCATAAGCTC-TAAG 6441
|| || |||||||| || || || | || ||||||||||| || || ||||| | ||||
Sbjct 62486 TCAAATTCTGGATCTTCTGCAGCGCGAATTTCTTGTGAAACGAAATCGTAAGCACGTAAG 62545
Query 6442 GTTAAGTGCAAGACCAATAATACCAATGCTAGAGGTCCAAAGACCCATAACAGGAACAAA 6501
|||| || ||||| | | |||||| | ||||||| || | |||||||||||
Sbjct 62546 TTTAA-AGCTAGACCTACTACACCAATAGCACTCATCCAAAGCCCTGTTACAGGAACAAA 62604
Query 6502 CAGCATAAAGAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGATCTGAGACCA 6561
||||||||||| |||| |||||| ||||| || || | ||||||||| ||||||||
Sbjct 62605 AAGCATAAAGAAGTGTAACCAACGTTTATTAGAAAAAGCTACACCAAAGATTTGAGACCA 62664
Query 6562 GAAACGATTAGCCGTGACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTCAAACGCCTT 6621
|| | ||||| || ||||| || || || || ||| |||| || || | ||||||
Sbjct 62665 AAATCTGTTAGCAGTTACCATAGAGTATGTTTCTTCTGCTTGAGTTGGGTTAAACGCACG 62724
Query 6622 GAAAGTATTTGATTGTTCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACCGTGAAT 6681
||| || |||| |||||||||||||| | || || |||||||||||||| |||||
Sbjct 62725 GAATGTGTTTGCACCATCACCATCTTCAAAAAGTGTGTTTTCTACAGTAGCACCATGAAT 62784
Query 6682 AGCACAGAGCAATGCTCCACCTAAGATACCTGCTACACCCATCATATGAAACGGGTTGAG 6741
|| || || || || | |||| | ||| ||||||||||||||||| || ||||| |
Sbjct 62785 GGCGCAAAGTAACGCAGCTCCTAGTACACCAGCTACACCCATCATATGGAAAGGGTTTAA 62844
Query 6742 CGTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGCAACACCAAA 6801
|||||||| |||||||| || | || | | || ||||| || || |||||||||||
Sbjct 62845 AGTCCAGTTATGGAAGCCTTGAAAAAATAAGATAAAACGGAAAATTGCCGCAACACCAAA 62904
Query 6802 CGACGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATACATGAGAAAGACAGACACAAA 6861
|| ||||||||||||| || || || | || || || || || ||||| || ||
Sbjct 62905 ACTTGGTGCAAAGAACCAACCTGATTGACCTAATGGGTAAATTAGGAACACAGAAACGAA 62964
Query 6862 GACAGCAATGGGACCAGAAAACGCGATTGCATTGTAGGGACGAATACCGACTAGACGTGC 6921
|||| ||| ||| ||||||| || || || || || |||||||| ||| ||| ||
Sbjct 62965 AACAGAAATTGGAGCAGAAAAAGCAATCGCGTTATATGGACGAATTTTTACTGAACGAGC 63024
Query 6922 GATCTCAAACTGCCGAAGCATGAAACCTATAAGGGCAAAGGCTCCGTGGAGCGCCACAAA 6981
|| ||||| || |||||||| ||||| || || | ||| | ||||| || || || ||
Sbjct 63025 AATTTCAAATTGACGAAGCATAAAACCAATCAGTGAAAAAGAACCGTGAAGGGCTACGAA 63084
Query 6982 AGGCCATAGTCCCCCAAGTTGGAGCCAGCGGACGAAATCTCCCTGAGCTTCTGGACCCCA 7041
|| ||| || || ||||||||| ||| || ||||| || ||||||||||| |||||
Sbjct 63085 AGTCCAAAGACCTCCAAGTTGGCACCAACGAGTAAAATCACCTTGAGCTTCTGGGCCCCA 63144
Query 7042 TAGAAGAAGTAGGGAATGTCCGAGAGCGTCAGCAGGAGTTGATACAGCAGCAGTAAGGAA 7101
|||| | || ||||| || | | | || ||||| || || |||||||| | |||
Sbjct 63145 AAGAAATAATAAAGAATGACCCATACTATTTGCTGGAGTAGAAACCGCAGCAGTTAAGAA 63204
Query 7102 ATTACATCCCTCAAGATACGAAGAAGCAATCCCGTGAGTGTACCAGCTCGTGACGAAAGT 7161
|||||| || || | ||| |||| ||| | || ||||| ||||| || || || ||
Sbjct 63205 ATTACAGCCTTCTAAATATGAAGTAGCTAAACCATGAGTATACCAAGAAGTTACAAATGT 63264
Query 7162 TGTGCCCGTGAGCCAACCGCCCAGTGCCAGGTAAGCAGTAGGGAACAGAAGAAGACCTGA 7221
|| || || | |||||| || ||||| || || ||||| ||||| | ||| | |||||
Sbjct 63265 AGTTCCTGTAAACCAACCACCAAGTGCAAGATATGCAGTCGGGAATAAAAGTAACCCTGA 63324
Query 7222 CCAACCAACAAAAACGAACCTATCACGCTTAAGCCAGTCATCGAGTACATCAAACCACCC 7281
||| || ||||||||||| | || || |||||||||||| | ||||||||| | ||
Sbjct 63325 CCATCCTACAAAAACGAAACGGTCGCGACGAAGCCAGTCATCAACAACATCAAACAAACC 63384
Query 7282 CCTTGTTGTTCTT 7294
| ||| |||||
Sbjct 63385 GC--GTTTTTCTT 63395
Score = 403 bits (446), Expect = 2e-107
Identities = 406/525 (77%), Gaps = 2/525 (0%)
Strand=Plus/Plus
Query 7997 TTGTGCTCTGCTTGGAAGACAAGCATGTAGTTGAACGTACCAGAGATGCCAAGAGGCATA 8056
|| ||||| |||||||| || | |||| |||| || |||||||| || || | |||||||
Sbjct 32223 TTATGCTCAGCTTGGAATACGATCATGAAGTTAAATGTACCAGAAATACCTAAAGGCATA 32282
Query 8057 GCGTCAGAGAAAGAACCTTGACCGAAAGGATAGACGAGGAATACAGCAGATGCTGCAGCA 8116
| |||||||||||||||||||||| || |||| || ||||||||| | ||||||||||
Sbjct 32283 CCATCAGAGAAAGAACCTTGACCGATTGGGTAGATGATGAATACAGCTGTTGCTGCAGCA 32342
Query 8117 ACTGGAGCAGAGTATGCTACACAGATCCAGGGACGCATACCTAGACGGTAAGAAAGTTCC 8176
||||| || ||||| || || ||||| ||||||||||||| |||| |||| | ||||
Sbjct 32343 ACTGGTGCTGAGTAAGCAACTGCAATCCATGGACGCATACCTAAACGGAAAGATAATTCC 32402
Query 8177 CACTCACGACCCATGTATGCATAGATACCGATCAGGAAGTGGAAGATAACGAGTTGGAAA 8236
||||||||||||||||| | | |||| || | | ||| || | | | |||||| ||
Sbjct 32403 CACTCACGACCCATGTAAGAACAGATTCCTAAGAAGAAATGACAAACGATAAGTTGGTAA 32462
Query 8237 GGACCACCGTTGTAGAGCCACTCATCAAGAGAAGCTGCTTCCCAGATGGGATAGAAGTGG 8296
|||||||||||||| | ||| || |||||||||||||||||||| || || ||||| ||
Sbjct 32463 GGACCACCGTTGTATAACCATTCGTCAAGAGAAGCTGCTTCCCAAATAGGGTAGAAATGT 32522
Query 8297 AGACCAATAGCGTTAGAAGAAGGAACAACAGCACCAGAGATGATGTTGTTGCCATACATG 8356
| ||| || |||||||||| ||||| || ||||||||| ||||||||||| || || |
Sbjct 32523 AAACCGATTGCGTTAGAAGTAGGAATAATAGCACCAGAAATGATGTTGTTTCCGTATAAA 32582
Query 8357 AGCGAACCAGCGACGGGTTCACGGATGCCGTCAATGTCCACAGGAGGAGCAGCGACGAAA 8416
|| ||||||| || || |||||||| || || || || |||||||| || |||| |||
Sbjct 32583 AGTGAACCAGAAACTGGCTCACGGATACCATCGATATCAACAGGAGGTGCTGCGATAAAA 32642
Query 8417 GCGACGATGAAACA-AATAGCAGCAGCGAGCAGCGTAGGAATCATCAGGACACCGAACCA 8475
|||| ||| ||||| || |||| | | ||||||||||| | ||||| |||||
Sbjct 32643 GCGATGAT-AAACACTGAAGTTGCAGTTAATAAAGTAGGAATCATTAATACACCAAACCA 32701
Query 8476 ACCGACATACAGACGATTGTTGGTGGAGGTTACCCAGTTACAGAA 8520
||||| || | ||| || | ||| || ||||| | ||| ||
Sbjct 32702 ACCGATGTATAAACGGTTTTCAGTGCTAGTAACCCACTCACAAAA 32746
Score = 396 bits (438), Expect = 3e-105
Identities = 357/449 (80%), Gaps = 0/449 (0%)
Strand=Plus/Plus
Query 7550 GGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATGCCAAGACCAGCACGGTTGAGC 7609
|||||||||||||| |||||||| ||||| |||||||| ||||| ||||||||||
Sbjct 30852 GGGAAGTTGTGAGCGTTACGCTCATGCATTACTTCCATACCAAGGTTGGCACGGTTGATA 30911
Query 7610 ACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATCAATGATGGACTGGTTGAAGTTG 7669
| ||| ||||| ||||| | ||||| ||||| ||| | | || ||||||||||||
Sbjct 30912 ATGTCAGCCCAAGTGTTAATAACACGGCCTTGTGAATCTACAACTGATTGGTTGAAGTTG 30971
Query 7670 AAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAGAGCAGTGAACCAGATGCCAACA 7729
||||| || | |||||| ||||| || || ||| | |||||| ||||| || ||||||
Sbjct 30972 AAACCATTTAAGTTGAAAGCCATAGTTGAAATACCTAAAGCAGTAAACCAAATACCAACA 31031
Query 7730 ACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGAGTTGTTGAACGAAGCGTATTGG 7789
|||||||| || || | |||||| || | ||||| |||||||| || ||||||||||||
Sbjct 31032 ACTGGCCAAGCAGCTAAGAAGAAATGTAATGAACGAGAGTTGTTAAAAGAAGCGTATTGG 31091
Query 7790 AAGATCAGACGACCAAAGTATCCGTGAGCAGCAACGATGTTGTAGGTCTCTTCTTCTTGA 7849
|| || | |||||| ||||| || ||||| |||||||||||||| || ||||||||||||
Sbjct 31092 AAAATTAAACGACCGAAGTAGCCATGAGCTGCAACGATGTTGTAAGTTTCTTCTTCTTGA 31151
Query 7850 CCGAACTTATAACCATAGTTCTGGGACTCAGACTCAGTGGTTTCACGAACCAGAGAAGAG 7909
||||| || ||||| | ||| || || |||||| |||||||||| ||||||||
Sbjct 31152 CCGAATTTGTAACCTTCGTTAGCTGATTCGTTCTCAGTTGTTTCACGAATTAGAGAAGAA 31211
Query 7910 GTTACAAGCGAACCATGCATCGCACTGAACAGAGAACCACCAAAGACACCAGCGACGCCC 7969
|||||||| ||||| ||||| ||| ||| | ||||||||||| ||||| || |||||
Sbjct 31212 GTTACAAGTGAACCGTGCATAGCAGAGAATAATGAACCACCAAATACACCGGCAACGCCT 31271
Query 7970 AGCATGTGGAAGGGGTGCATCAGGATGTT 7998
||||| ||||| |||||||| || |||||
Sbjct 31272 AGCATATGGAATGGGTGCATTAGAATGTT 31300
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622096804384000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |