Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq2029 618 6e-172 >seq2029 Length=64692 Score = 618 bits (684), Expect = 6e-172 Identities = 759/1033 (73%), Gaps = 4/1033 (0%) Strand=Plus/Plus Query 6263 AGAGCGTTGCCTCTTGGCAATACTTCTTCAGGAAATACAAAGTTTTCATGTGGTTGATCC 6322 |||||||| || | ||| || || || ||||| ||||||| |||||||| || ||||| Sbjct 62366 AGAGCGTTTCCACGTGGTAAAACCTCCTCAGGGAATACAAGTTTTTCATGAGGCTGATCT 62425 Query 6323 ACTGGTGCCATCCAGGCACGTAGACCTTCATTCAATAGGATGTTCTTGGTATAGAACGTC 6382 | |||||||| ||||| | |||||| || || ||||| || ||||||||||| || Sbjct 62426 TGAGCAGCCATCCAAGCACGAATACCTTCGTTTAAAAGGATATTTTTGGTATAGAAAGTT 62485 Query 6383 TCGAACTCTGGATCCTCCGCTGCTCTGATCTCTTGTGAAACAAAGTCATAAGCTC-TAAG 6441 || || |||||||| || || || | || ||||||||||| || || ||||| | |||| Sbjct 62486 TCAAATTCTGGATCTTCTGCAGCGCGAATTTCTTGTGAAACGAAATCGTAAGCACGTAAG 62545 Query 6442 GTTAAGTGCAAGACCAATAATACCAATGCTAGAGGTCCAAAGACCCATAACAGGAACAAA 6501 |||| || ||||| | | |||||| | ||||||| || | ||||||||||| Sbjct 62546 TTTAA-AGCTAGACCTACTACACCAATAGCACTCATCCAAAGCCCTGTTACAGGAACAAA 62604 Query 6502 CAGCATAAAGAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGATCTGAGACCA 6561 ||||||||||| |||| |||||| ||||| || || | ||||||||| |||||||| Sbjct 62605 AAGCATAAAGAAGTGTAACCAACGTTTATTAGAAAAAGCTACACCAAAGATTTGAGACCA 62664 Query 6562 GAAACGATTAGCCGTGACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTCAAACGCCTT 6621 || | ||||| || ||||| || || || || ||| |||| || || | |||||| Sbjct 62665 AAATCTGTTAGCAGTTACCATAGAGTATGTTTCTTCTGCTTGAGTTGGGTTAAACGCACG 62724 Query 6622 GAAAGTATTTGATTGTTCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACCGTGAAT 6681 ||| || |||| |||||||||||||| | || || |||||||||||||| ||||| Sbjct 62725 GAATGTGTTTGCACCATCACCATCTTCAAAAAGTGTGTTTTCTACAGTAGCACCATGAAT 62784 Query 6682 AGCACAGAGCAATGCTCCACCTAAGATACCTGCTACACCCATCATATGAAACGGGTTGAG 6741 || || || || || | |||| | ||| ||||||||||||||||| || ||||| | Sbjct 62785 GGCGCAAAGTAACGCAGCTCCTAGTACACCAGCTACACCCATCATATGGAAAGGGTTTAA 62844 Query 6742 CGTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGCAACACCAAA 6801 |||||||| |||||||| || | || | | || ||||| || || ||||||||||| Sbjct 62845 AGTCCAGTTATGGAAGCCTTGAAAAAATAAGATAAAACGGAAAATTGCCGCAACACCAAA 62904 Query 6802 CGACGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATACATGAGAAAGACAGACACAAA 6861 || ||||||||||||| || || || | || || || || || ||||| || || Sbjct 62905 ACTTGGTGCAAAGAACCAACCTGATTGACCTAATGGGTAAATTAGGAACACAGAAACGAA 62964 Query 6862 GACAGCAATGGGACCAGAAAACGCGATTGCATTGTAGGGACGAATACCGACTAGACGTGC 6921 |||| ||| ||| ||||||| || || || || || |||||||| ||| ||| || Sbjct 62965 AACAGAAATTGGAGCAGAAAAAGCAATCGCGTTATATGGACGAATTTTTACTGAACGAGC 63024 Query 6922 GATCTCAAACTGCCGAAGCATGAAACCTATAAGGGCAAAGGCTCCGTGGAGCGCCACAAA 6981 || ||||| || |||||||| ||||| || || | ||| | ||||| || || || || Sbjct 63025 AATTTCAAATTGACGAAGCATAAAACCAATCAGTGAAAAAGAACCGTGAAGGGCTACGAA 63084 Query 6982 AGGCCATAGTCCCCCAAGTTGGAGCCAGCGGACGAAATCTCCCTGAGCTTCTGGACCCCA 7041 || ||| || || ||||||||| ||| || ||||| || ||||||||||| ||||| Sbjct 63085 AGTCCAAAGACCTCCAAGTTGGCACCAACGAGTAAAATCACCTTGAGCTTCTGGGCCCCA 63144 Query 7042 TAGAAGAAGTAGGGAATGTCCGAGAGCGTCAGCAGGAGTTGATACAGCAGCAGTAAGGAA 7101 |||| | || ||||| || | | | || ||||| || || |||||||| | ||| Sbjct 63145 AAGAAATAATAAAGAATGACCCATACTATTTGCTGGAGTAGAAACCGCAGCAGTTAAGAA 63204 Query 7102 ATTACATCCCTCAAGATACGAAGAAGCAATCCCGTGAGTGTACCAGCTCGTGACGAAAGT 7161 |||||| || || | ||| |||| ||| | || ||||| ||||| || || || || Sbjct 63205 ATTACAGCCTTCTAAATATGAAGTAGCTAAACCATGAGTATACCAAGAAGTTACAAATGT 63264 Query 7162 TGTGCCCGTGAGCCAACCGCCCAGTGCCAGGTAAGCAGTAGGGAACAGAAGAAGACCTGA 7221 || || || | |||||| || ||||| || || ||||| ||||| | ||| | ||||| Sbjct 63265 AGTTCCTGTAAACCAACCACCAAGTGCAAGATATGCAGTCGGGAATAAAAGTAACCCTGA 63324 Query 7222 CCAACCAACAAAAACGAACCTATCACGCTTAAGCCAGTCATCGAGTACATCAAACCACCC 7281 ||| || ||||||||||| | || || |||||||||||| | ||||||||| | || Sbjct 63325 CCATCCTACAAAAACGAAACGGTCGCGACGAAGCCAGTCATCAACAACATCAAACAAACC 63384 Query 7282 CCTTGTTGTTCTT 7294 | ||| ||||| Sbjct 63385 GC--GTTTTTCTT 63395 Score = 403 bits (446), Expect = 2e-107 Identities = 406/525 (77%), Gaps = 2/525 (0%) Strand=Plus/Plus Query 7997 TTGTGCTCTGCTTGGAAGACAAGCATGTAGTTGAACGTACCAGAGATGCCAAGAGGCATA 8056 || ||||| |||||||| || | |||| |||| || |||||||| || || | ||||||| Sbjct 32223 TTATGCTCAGCTTGGAATACGATCATGAAGTTAAATGTACCAGAAATACCTAAAGGCATA 32282 Query 8057 GCGTCAGAGAAAGAACCTTGACCGAAAGGATAGACGAGGAATACAGCAGATGCTGCAGCA 8116 | |||||||||||||||||||||| || |||| || ||||||||| | |||||||||| Sbjct 32283 CCATCAGAGAAAGAACCTTGACCGATTGGGTAGATGATGAATACAGCTGTTGCTGCAGCA 32342 Query 8117 ACTGGAGCAGAGTATGCTACACAGATCCAGGGACGCATACCTAGACGGTAAGAAAGTTCC 8176 ||||| || ||||| || || ||||| ||||||||||||| |||| |||| | |||| Sbjct 32343 ACTGGTGCTGAGTAAGCAACTGCAATCCATGGACGCATACCTAAACGGAAAGATAATTCC 32402 Query 8177 CACTCACGACCCATGTATGCATAGATACCGATCAGGAAGTGGAAGATAACGAGTTGGAAA 8236 ||||||||||||||||| | | |||| || | | ||| || | | | |||||| || Sbjct 32403 CACTCACGACCCATGTAAGAACAGATTCCTAAGAAGAAATGACAAACGATAAGTTGGTAA 32462 Query 8237 GGACCACCGTTGTAGAGCCACTCATCAAGAGAAGCTGCTTCCCAGATGGGATAGAAGTGG 8296 |||||||||||||| | ||| || |||||||||||||||||||| || || ||||| || Sbjct 32463 GGACCACCGTTGTATAACCATTCGTCAAGAGAAGCTGCTTCCCAAATAGGGTAGAAATGT 32522 Query 8297 AGACCAATAGCGTTAGAAGAAGGAACAACAGCACCAGAGATGATGTTGTTGCCATACATG 8356 | ||| || |||||||||| ||||| || ||||||||| ||||||||||| || || | Sbjct 32523 AAACCGATTGCGTTAGAAGTAGGAATAATAGCACCAGAAATGATGTTGTTTCCGTATAAA 32582 Query 8357 AGCGAACCAGCGACGGGTTCACGGATGCCGTCAATGTCCACAGGAGGAGCAGCGACGAAA 8416 || ||||||| || || |||||||| || || || || |||||||| || |||| ||| Sbjct 32583 AGTGAACCAGAAACTGGCTCACGGATACCATCGATATCAACAGGAGGTGCTGCGATAAAA 32642 Query 8417 GCGACGATGAAACA-AATAGCAGCAGCGAGCAGCGTAGGAATCATCAGGACACCGAACCA 8475 |||| ||| ||||| || |||| | | ||||||||||| | ||||| ||||| Sbjct 32643 GCGATGAT-AAACACTGAAGTTGCAGTTAATAAAGTAGGAATCATTAATACACCAAACCA 32701 Query 8476 ACCGACATACAGACGATTGTTGGTGGAGGTTACCCAGTTACAGAA 8520 ||||| || | ||| || | ||| || ||||| | ||| || Sbjct 32702 ACCGATGTATAAACGGTTTTCAGTGCTAGTAACCCACTCACAAAA 32746 Score = 396 bits (438), Expect = 3e-105 Identities = 357/449 (80%), Gaps = 0/449 (0%) Strand=Plus/Plus Query 7550 GGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATGCCAAGACCAGCACGGTTGAGC 7609 |||||||||||||| |||||||| ||||| |||||||| ||||| |||||||||| Sbjct 30852 GGGAAGTTGTGAGCGTTACGCTCATGCATTACTTCCATACCAAGGTTGGCACGGTTGATA 30911 Query 7610 ACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATCAATGATGGACTGGTTGAAGTTG 7669 | ||| ||||| ||||| | ||||| ||||| ||| | | || |||||||||||| Sbjct 30912 ATGTCAGCCCAAGTGTTAATAACACGGCCTTGTGAATCTACAACTGATTGGTTGAAGTTG 30971 Query 7670 AAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAGAGCAGTGAACCAGATGCCAACA 7729 ||||| || | |||||| ||||| || || ||| | |||||| ||||| || |||||| Sbjct 30972 AAACCATTTAAGTTGAAAGCCATAGTTGAAATACCTAAAGCAGTAAACCAAATACCAACA 31031 Query 7730 ACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGAGTTGTTGAACGAAGCGTATTGG 7789 |||||||| || || | |||||| || | ||||| |||||||| || |||||||||||| Sbjct 31032 ACTGGCCAAGCAGCTAAGAAGAAATGTAATGAACGAGAGTTGTTAAAAGAAGCGTATTGG 31091 Query 7790 AAGATCAGACGACCAAAGTATCCGTGAGCAGCAACGATGTTGTAGGTCTCTTCTTCTTGA 7849 || || | |||||| ||||| || ||||| |||||||||||||| || |||||||||||| Sbjct 31092 AAAATTAAACGACCGAAGTAGCCATGAGCTGCAACGATGTTGTAAGTTTCTTCTTCTTGA 31151 Query 7850 CCGAACTTATAACCATAGTTCTGGGACTCAGACTCAGTGGTTTCACGAACCAGAGAAGAG 7909 ||||| || ||||| | ||| || || |||||| |||||||||| |||||||| Sbjct 31152 CCGAATTTGTAACCTTCGTTAGCTGATTCGTTCTCAGTTGTTTCACGAATTAGAGAAGAA 31211 Query 7910 GTTACAAGCGAACCATGCATCGCACTGAACAGAGAACCACCAAAGACACCAGCGACGCCC 7969 |||||||| ||||| ||||| ||| ||| | ||||||||||| ||||| || ||||| Sbjct 31212 GTTACAAGTGAACCGTGCATAGCAGAGAATAATGAACCACCAAATACACCGGCAACGCCT 31271 Query 7970 AGCATGTGGAAGGGGTGCATCAGGATGTT 7998 ||||| ||||| |||||||| || ||||| Sbjct 31272 AGCATATGGAATGGGTGCATTAGAATGTT 31300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622096804384000