Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq3285 123 3e-23 seq538 116 5e-21 seq326 87.8 2e-12 >seq3285 Length=63365 Score = 123 bits (136), Expect = 3e-23 Identities = 119/152 (78%), Gaps = 3/152 (2%) Strand=Plus/Minus Query 127576 ACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAA 127635 ||| |||||||| ||||||||||| |||||| |||| || || |||||||||||| Sbjct 18868 ACCAGGCATGAGCTGCCGCTTCTTCAGCCAGAAGATCGAGCAGAAAGAGCCAGAGAAGTG 18809 Query 127636 GATCCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATC 127695 ||| ||||||||||||||| | || | || ||||| |||||| ||| | | | || Sbjct 18808 GATGCCCTCCACACACGCGTAGGCGACAAGCCGCTCTGCAAAGCAGCTG---CTGCTCTC 18752 Query 127696 AAACCACTTCATCGCCCACTGTGCCTTTTTCT 127727 | |||||||||||||||||| ||||| |||| Sbjct 18751 TATCCACTTCATCGCCCACTGCGCCTTCTTCT 18720 >seq538 Length=19016 Score = 116 bits (128), Expect = 5e-21 Identities = 117/152 (77%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| ||| ||| || || |||||||| || ||||| || || || ||| || || Sbjct 16869 GCAAAGTCTGTGTGCAGGCCTTCGTCACGAGAAATGAGCTCGTTTGAAAAGGTGAGGCCG 16810 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 |||||||| || |||||||| | |||||| || | || || ||||| ||||||||||| Sbjct 16809 GGCATGAGCCCTCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCGGAGAAGAAGATG 16750 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTC 127671 |||||||| || || ||||||| || ||||| Sbjct 16749 CCCTCCACGCAAGCAAACGCAATCAGGCGCTC 16718 >seq326 Length=80286 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 115902 ATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGA 115961 ||||||||| | ||||| |||||||||||||| ||||| |||| ||| ||| ||| Sbjct 57207 ATAGATGTTTGATGTGTAAGGCTCAAAGCACTCGTTGTTGCCCAGGATCTGGCTGGTGCT 57266 Query 115962 GGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCG 115997 ||| |||||||||||||||| ||| || |||||| Sbjct 57267 GGCGGTGGGCATGGGTGCCACGAGCAGCGAGTTGCG 57302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613479592176000