Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq3244 109 5e-19 seq538 104 2e-17 seq3143 87.8 2e-12 >seq3244 Length=4747 Score = 109 bits (120), Expect = 5e-19 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||||||||| || ||| |||| || ||||| ||||| | || ||||| |||||||| Sbjct 3558 GACAAAGAGGGCATCCCCCCCGATCAGCAGCGCCTCATCTTTGCCGGCAAGCAGCTGGAG 3617 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 || | ||||| || ||||||||||||||| ||||| | || |||| |||||||| Sbjct 3618 GATGGCCGCACGCTGGCCGACTACAACATCCAGAAGGAGTCCACCTTGCACCTGGTGCTG 3677 Query 38457 CGTTTGAGAGGCGGC 38471 || || |||||||| Sbjct 3678 CGCCTGCGAGGCGGC 3692 Score = 104 bits (114), Expect = 2e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 |||||||| || || ||| |||| || ||||| ||||| | |||||||| |||||||| Sbjct 3106 GACAAAGAAGGCATCCCCCCCGATCAGCAGCGTCTCATCTTTGCGGGCAAGCAGCTGGAG 3165 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 || | ||||| || ||||||||||||||| ||||| | || |||| |||||||| Sbjct 3166 GATGGCCGCACGCTGGCCGACTACAACATCCAGAAGGAGTCCACCTTGCACCTGGTGCTG 3225 Query 38457 CGTTTGAGAGGCGGC 38471 || || |||| ||| Sbjct 3226 CGCCTGCGAGGAGGC 3240 >seq538 Length=19016 Score = 104 bits (114), Expect = 2e-17 Identities = 125/168 (74%), Gaps = 4/168 (2%) Strand=Plus/Minus Query 132884 TGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGC 132943 || ||| || ||| |||||||| |||| ||| ||||| | |||||||| ||||| Sbjct 16883 TGTACAGCAGGCATGCAAAGTCTGTGTGCAGGCCTTCGTCACGAGAAATGAGCTCGTT-- 16826 Query 132944 TGAAA--GTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACT 133001 ||||| || | |||||||||||| || || || |||||||| || |||| | ||| Sbjct 16825 TGAAAAGGTGAGGCCGGGCATGAGCCCTCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGA 16766 Query 133002 GCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTc 133049 ||| || ||||||| |||||| ||| || || || | ||||||||| Sbjct 16765 GCCGGAGAAGAAGATGCCCTCCACGCAAGCAAACGCAATCAGGCGCTC 16718 >seq3143 Length=13185 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 || || ||| | ||||| ||||| || || | |||||||| |||||||| |||| ||| Sbjct 6997 GGCATCCCCCCTGACCAGCAGCGCCTGATCTTTGCGGGCAAGCAGCTGGAGGACGGCCGC 7056 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGA 38465 || || |||||||||||||| ||||| | |||||||| ||||| |||| || | Sbjct 7057 ACACTGGCGGACTACAACATCCAGAAGGAGTCCACGCTGCACCTGGTGTTGCGCCTGCGC 7116 Query 38466 GGCGGC 38471 || ||| Sbjct 7117 GGAGGC 7122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500150292224000