Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq161 131 2e-25 seq3451 113 6e-20 seq3202 89.7 7e-13 >seq161 Length=11266 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 7202 TTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCA 7261 || |||||||| ||||| ||||| ||||| | |||||| ||| |||||||| |||||| Sbjct 4486 TTCTCGACAGGCTCCATGCATTTGCGGAAGAGGTCCATGTTCAGCTCCTCAAAGCGTGCA 4427 Query 7262 CGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTT 7321 ||||| ||||| | || ||||| | ||| ||||| | ||||||||| || ||| | | Sbjct 4426 CGGGTGATGGAGGAGTAAAAATCGATGCCCTCGTACAGCGAATCAATCTCGATGCTGGCC 4367 Query 7322 TGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGG 7381 || | | || || ||||| ||||| || ||||| || | || || | || || || Sbjct 4366 TGAGTGGAGGAGGACAACGTGCGCTTGGCACGCTCGCATGAAGTGCGCAGGCGCCGCAGA 4307 Query 7382 GCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTC 7428 ||||||||||| | || || ||| ||| || ||||| || || Sbjct 4306 GCACGCGGGTTTGAGCTGATGTCCTTCCGATGCTTCCGTTTGAATTC 4260 Score = 113 bits (124), Expect = 6e-20 Identities = 143/196 (73%), Gaps = 3/196 (2%) Strand=Plus/Minus Query 7920 GGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCA 7979 |||| || ||||| | ||||| || ||||||||||||||||| ||||| ||||||||| Sbjct 3143 GGTCTGAGAACTTGCGACCGATGAGCCGCTTTGCATCAAAAACAGTGTTGATGGGGTTCA 3084 Query 7980 TGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGA 8039 | ||| |||||||| || || || || || || || || | || || || || | Sbjct 3083 TCGCTACCTGGTTCTTGGCGGCATCGCCAATTAGGCGCTC---GGTGTCGGTGAATGCCA 3027 Query 8040 CGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTT 8099 |||| || || || || || || || || ||||| | ||| ||||| ||||| || | | Sbjct 3026 CGTATGAGGGAGTGGTGCGGTTGCCCTGCTCGTTTGGAATGATTTCCACGCGATCATGCT 2967 Query 8100 GCCAGACGCCGACGCA 8115 |||| | || ||||| Sbjct 2966 GCCACAGACCAACGCA 2951 >seq3451 Length=60208 Score = 113 bits (124), Expect = 6e-20 Identities = 192/278 (69%), Gaps = 3/278 (1%) Strand=Plus/Minus Query 7790 ACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCA 7849 ||||| || || |||||||| |||| |||||| || || || || || || || ||| Sbjct 50574 ACCATGGAAGAGATCTCTTCTGCCGAAAACTGCTTGTGCTCCCCCTTGAACTCGACATCA 50515 Query 7850 ATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCT 7909 ||||| || || || || | || | || || || | | ||| | ||| || || Sbjct 50514 ATCATCGGCTTCTCGGCCGGCCCCGAAATCACTTTGAAGGGCCAGTGCGACATGTCATCC 50455 Query 7910 TGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTT 7969 | ||| | ||||||| || | ||||| || |||||||||||||| || ||||| Sbjct 50454 TTGACAGCTGGGTCCGAGAAGCGGCGACCGATGAGGCGCTTTGCATCAAACACAGTGTTG 50395 Query 7970 TTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCC 8029 |||| ||||| || | |||||||| || ||||| || | |||||||| | | || Sbjct 50394 CTGGGATTCATTGCCGCCTGGTTCTTGGCGGCGTCGCCCACCAGACGTTC---AGTGTCA 50338 Query 8030 GTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTG 8067 || || ||||| || || || || || || || || || Sbjct 50337 GTGAAGGCGACATAGGAGGGCGTTGTGCGGTTTCCCTG 50300 >seq3202 Length=21510 Score = 89.7 bits (98), Expect = 7e-13 Identities = 187/278 (67%), Gaps = 3/278 (1%) Strand=Plus/Minus Query 7790 ACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCA 7849 ||||| || ||||||||||| |||| ||| || || || || || || ||||| || Sbjct 2587 ACCATGGAAGAAATCTCTTCTGCCGAAAATTGCTTGTGCTCCCCCTTGAATTCAACATCT 2528 Query 7850 ATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCT 7909 ||||| ||||| | || | || | || || | | | ||| | ||| ||||| Sbjct 2527 ATCATCGGTTTCTTGGCCGGTCCAGAAATCACTCTGAAGGGCCACTGCGACATGTCGTCA 2468 Query 7910 TGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTT 7969 | ||| | |||| || || | ||||| || ||||| ||||| | || || ||| Sbjct 2467 TTGACGGCTGGGTCGGAGAAGCGGCGGCCGATGAGGCGCTTGGCATCGACCACGGTATTT 2408 Query 7970 TTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCC 8029 |||||||||| || | |||||||| || ||||| || | || || || | || Sbjct 2407 GTGGGGTTCATTGCCGCCTGGTTCTTGGCGGCGTCGCCCACCAGCCG---CTTGGTGTCG 2351 Query 8030 GTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTG 8067 || || |||||||| || || || || || || || || Sbjct 2350 GTGAAGGCGACGTAGGAGGGCGTGGTGCGCTTGCCCTG 2313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635104219024000