Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq2029 594 6e-165 seq112 98.7 1e-15 >seq2029 Length=64692 Score = 594 bits (658), Expect = 6e-165 Identities = 747/1024 (73%), Gaps = 1/1024 (0%) Strand=Plus/Minus Query 181423 GTTTGACATCCTTGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGG 181482 |||||| | |||||||||||||| |||||||| || || ||||| || ||||| || Sbjct 63379 GTTTGATGTTGTTGATGACTGGCTTCGTCGCGACCGTTTCGTTTTTGTAGGATGGTCAGG 63320 Query 181483 ACTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGGGGCTGGCTCACTGGCACTACTTT 181542 ||||| | || || ||||| ||||||||| |||| || ||| | || || ||||| || Sbjct 63319 GTTACTTTTATTCCCGACTGCATATCTTGCACTTGGTGGTTGGTTTACAGGAACTACATT 63260 Query 181543 TGTTACGTCGTGGTACACCCACGGATTGGCGTCTTCCTACCTTGAGGGTGCTAATTTCCT 181602 ||| || || ||||| || || || || || |||| || | || || ||||||| | Sbjct 63259 TGTAACTTCTTGGTATACTCATGGTTTAGCTACTTCATATTTAGAAGGCTGTAATTTCTT 63200 Query 181603 TACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGG 181662 || || || || || || || || | ||||||||||||| | | | |||||||| Sbjct 63199 AACTGCTGCGGTTTCTACTCCAGCAAATAGTATGGGTCATTCTTTATTATTTCTTTGGGG 63140 Query 181663 TCCTGAAGCTCAGGGCGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGGCTTTTGT 181722 || |||||||| || ||||| || ||| ||||||||| || || ||| |||| || Sbjct 63139 CCCAGAAGCTCAAGGTGATTTTACTCGTTGGTGCCAACTTGGAGGTCTTTGGACTTTCGT 63080 Query 181723 GGCGCTCCACGGAGCCTTCGCTCTTATCGGTTTTATGCTCAGGCAATTTGAACTTGCTCG 181782 || || ||||| | || | || || ||||||||||| | ||||||||| ||||||| Sbjct 63079 AGCCCTTCACGGTTCTTTTTCACTGATTGGTTTTATGCTTCGTCAATTTGAAATTGCTCG 63020 Query 181783 TCTAATCGGAATCCGACCCTACAATGCGATTGCTTTTTCCGGTCCTATTGCTGTATTCGT 181842 | | | ||| || || || || |||||||||||||| | ||| ||| |||| ||||| Sbjct 63019 TTCAGTAAAAATTCGTCCATATAACGCGATTGCTTTTTCTGCTCCAATTTCTGTTTTCGT 62960 Query 181843 CTCTGTATTTCTCATCTATCCTCTGGGACAATCCAGTTGGTTCTTTGCGCCGAGTTTCGG 181902 ||||| || || || || || | || ||||| ||||||||||||| || ||||| || Sbjct 62959 TTCTGTGTTCCTAATTTACCCATTAGGTCAATCAGGTTGGTTCTTTGCACCAAGTTTTGG 62900 Query 181903 TGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAA 181962 ||| ||||| |||||||| || | | || | || ||||| ||||| ||||| | || Sbjct 62899 TGTTGCGGCAATTTTCCGTTTTATCTTATTTTTTCAAGGCTTCCATAACTGGACTTTAAA 62840 Query 181963 TCCCTTCCATATGATGGGTGTTGCTGGTATCCTGGGTGGCGCATTACTCTCTGCAATTCA 182022 || ||||||||||||||||| |||||| | || || | || ||||| | || ||||| Sbjct 62839 CCCTTTCCATATGATGGGTGTAGCTGGTGTACTAGGAGCTGCGTTACTTTGCGCCATTCA 62780 Query 182023 CGGTGTGACCGTGGAGAATACTCTGTATCAAGACGGTGACCAAGCAAATACTTTCAAAGC 182082 |||| || || || || || || | | |||| ||||| ||||| || ||| || Sbjct 62779 TGGTGCTACTGTAGAAAACACACTTTTTGAAGATGGTGATGGTGCAAACACATTCCGTGC 62720 Query 182083 ATTCGATTCAACTCAAGAAGAAGAAACCTATTCAATGGTTACAGCGAACCGCTTCTGGTC 182142 || | ||||||||| ||||||||| || || ||||| || || ||| | || ||||| Sbjct 62719 GTTTAACCCAACTCAAGCAGAAGAAACATACTCTATGGTAACTGCTAACAGATTTTGGTC 62660 Query 182143 TCAGATCTTCGGTATTGCGTTTAGCAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGT 182202 ||| ||||| ||| | || ||| ||||| | ||||| || ||||||||||| ||||| Sbjct 62659 TCAAATCTTTGGTGTAGCTTTTTCTAATAAACGTTGGTTACACTTCTTTATGCTTTTTGT 62600 Query 182203 TCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCG 182262 |||||| | || ||||||| ||| | || ||| | | ||||| ||| | ||| | || Sbjct 62599 TCCTGTAACAGGGCTTTGGATGAGTGCTATTGGTGTAGTAGGTCTAGCTTTAAACTTACG 62540 Query 182263 TGCTTATGACTTTGTATCCCAAGAAATCAGAGCATCAGAAGACCCAGAGTTCGAGACGTT 182322 |||||| || || || || |||||||| | || ||||||| ||||| || || || || Sbjct 62539 TGCTTACGATTTCGTTTCACAAGAAATTCGCGCTGCAGAAGATCCAGAATTTGAAACTTT 62480 Query 182323 CTACACAAAGAACATTCTCTTGAATGAAGGTCTGCGTGCATGGTTAGCACCAGTCGATCA 182382 ||| || || || || || || || |||||| | ||||| ||| | || | ||||| Sbjct 62479 CTATACCAAAAATATCCTTTTAAACGAAGGTATTCGTGCTTGGATGGCTGCTCAAGATCA 62420 Query 182383 ACCACATGAGAACTTTGTGTTCCCTGAGGAAGTATTACCCAGAGGTAACGCACTGTGAAC 182442 || ||||| || |||| ||||||||||| || ||||| | || ||||| || | || Sbjct 62419 GCCTCATGAAAAACTTGTATTCCCTGAGGAGGTTTTACCACGTGGAAACGCTCT-TTAAT 62361 Query 182443 GGTT 182446 |||| Sbjct 62360 GGTT 62357 Score = 379 bits (420), Expect = 2e-100 Identities = 403/526 (77%), Gaps = 4/526 (1%) Strand=Plus/Minus Query 179748 TTCTGCGAGTGGGTAACCTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTTCTG 179807 || || |||||||| || || | ||||| | || |||||||||| || || | Sbjct 32746 TTTTGTGAGTGGGTTACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTATTA 32687 Query 179808 ATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCTCC 179866 |||||||| ||| | || | |||||| || | || ||| |||| || ||||| || || Sbjct 32686 ATGATTCCTACTTTATTAACTGCAACT-TCAGTGTTTATCATCGCTTTTATCGCAGCACC 32628 Query 179867 CCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 179926 ||||| || |||||||| |||||||| || || |||||||||| | || || ||||| Sbjct 32627 TCCTGTTGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCACTTTTATACGGAAACAA 32568 Query 179927 CATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 179986 |||||| |||||||| || ||||| |||| |||||||| ||| | || ||||| || || Sbjct 32567 CATCATTTCTGGTGCTATTATTCCTACTTCTAACGCAATCGGTTTACATTTCTACCCTAT 32508 Query 179987 CTGGGAAGCCGCATCGCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCAACTTGTCGT 180046 |||||||| || || |||||||| ||| | || ||||||||||||| ||||||| |||| Sbjct 32507 TTGGGAAGCAGCTTCTCTTGACGAATGGTTATACAACGGTGGTCCTTACCAACTTATCGT 32448 Query 180047 CTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACTTTCTTATCG 180106 | || ||| | | || |||| | | ||||||||||||||||||||| | |||| || Sbjct 32447 TTGTCATTTCTTCTTAGGAATCTGTTCTTACATGGGTCGTGAGTGGGAATTATCTTTCCG 32388 Query 180107 CTTGGGTATGCGCCCCTGGATCTGC-GTAGCATATTCTGCTCCAGTCGCTGCAGCATCTG 180165 || |||||||| || ||||| ||| || || || || || ||||| ||||||||| | | Sbjct 32387 TTTAGGTATGCGTCCATGGAT-TGCAGTTGCTTACTCAGCACCAGTTGCTGCAGCAACAG 32329 Query 180166 CTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCATTCTCTGACGCAATGCCCCTCGGCA 180225 |||||||| || |||| || ||||||||||||| |||||||| | ||||| | || | Sbjct 32328 CTGTATTCATCATCTACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTA 32269 Query 180226 TTTCTGGCACCTTCAACTACATGCTTGTTTTCCAAGCAGAGCACAA 180271 ||||||| || || |||| |||| | || |||||||| ||||| || Sbjct 32268 TTTCTGGTACATTTAACTTCATGATCGTATTCCAAGCTGAGCATAA 32223 Score = 360 bits (398), Expect = 2e-94 Identities = 349/449 (78%), Gaps = 0/449 (0%) Strand=Plus/Minus Query 180270 AACATCCTGATGCACCCCTTCCACATGCTGGGAGTAGCAGGTGTCTTCGGCGGTTCACTG 180329 ||||| || |||||||| ||||| ||||| || || || ||||| || || |||||| | Sbjct 31300 AACATTCTAATGCACCCATTCCATATGCTAGGCGTTGCCGGTGTATTTGGTGGTTCATTA 31241 Query 180330 TTCTCCGCAATGCACGGTTCACTGGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACT 180389 ||||| || |||||||||||||| || || ||||| || |||||||||| ||||| | Sbjct 31240 TTCTCTGCTATGCACGGTTCACTTGTAACTTCTTCTCTAATTCGTGAAACAACTGAGAAC 31181 Query 180390 GAGTCCCAGAACTACGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTTGCT 180449 || || ||| | |||||||| || |||||||||||||| || |||||||||||||| Sbjct 31180 GAATCAGCTAACGAAGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCA 31121 Query 180450 GCACATGGATACTTCGGTCGTCTGATCTTCCAGTATGCATCGTTCAACAACTCCCGTTCA 180509 || ||||| |||||||||||| | || ||||| || || || || |||||||| |||||| Sbjct 31120 GCTCATGGCTACTTCGGTCGTTTAATTTTCCAATACGCTTCTTTTAACAACTCTCGTTCA 31061 Query 180510 CTTCACTTCTTCCTGGCAGCATGGCCTGTCGTTGGCATCTGGTTCACTGCACTGGGCGTA 180569 | || |||||| | || || ||||| || ||||| || ||||| ||||| | || | Sbjct 31060 TTACATTTCTTCTTAGCTGCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGTATT 31001 Query 180570 AGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATTGATGGTCAA 180629 || ||||| |||||| | || ||||||||||||||||| || | | ||| ||| Sbjct 31000 TCAACTATGGCTTTCAACTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAA 30941 Query 180630 GGTCGTGTGCTCAACACTTGGGCAGACGTACTCAACCGCGCTGGTCTGGGTATGGAAGTT 180689 || ||||| | ||||||||||| ||| | ||||||| || || ||||||||||| Sbjct 30940 GGCCGTGTTATTAACACTTGGGCTGACATTATCAACCGTGCCAACCTTGGTATGGAAGTA 30881 Query 180690 ATGCACGAGCGTAATGCTCACAACTTCCC 180718 ||||| |||||||| |||||||||||||| Sbjct 30880 ATGCATGAGCGTAACGCTCACAACTTCCC 30852 >seq112 Length=44222 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 141255 TCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAATC 141314 ||||||||||||||| || ||||| | ||||||||||||| ||||||||||||||| || Sbjct 35610 TCCTCAGTAGCTCAGTGGTAGAGCGGTCGACTGTTAATCGATTGGTCGTAGGTTCAAGTC 35669 Query 141315 CTACCTGGGGAG 141326 |||||||||||| Sbjct 35670 CTACCTGGGGAG 35681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610369332144000