Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05]
3,600 sequences; 37,342,230 total letters
Query= NC_015280.1
Length=181044
Score E
Sequences producing significant alignments: (Bits) Value
seq2029 466 2e-126
>seq2029
Length=64692
Score = 466 bits (516), Expect = 2e-126
Identities = 731/1047 (70%), Gaps = 27/1047 (3%)
Strand=Plus/Minus
Query 170523 GGTTGGTTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGATGG 170582
|||| |||||||||| |||| |||||| | | || ||||| || || ||||||||
Sbjct 63384 GGTTTGTTTGATGTTGTTGATGACTGGCTTCGTCGCGACCGTTTCGTTTTTGTAGGATGG 63325
Query 170583 TCTGGT---CTTTTACTTCTGCCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGGG 170639
|| || |||||| | | | || ||||| || || | ||||||||||| |||
Sbjct 63324 TCAGGGTTACTTTTATTCCCGACT---GCATATCTTGCACTTGGTGGTTGGTTTACAGGA 63268
Query 170640 ACTACCTTCGTTACATCATGGTATACACATGGTGTTGCTTCCTCATATCTTGAGGGATGT 170699
||||| || || || || |||||||| |||||| | ||| | |||||| | || || |||
Sbjct 63267 ACTACATTTGTAACTTCTTGGTATACTCATGGTTTAGCTACTTCATATTTAGAAGGCTGT 63208
Query 170700 AACTTCCTAACAGCAGCAGTTTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTC 170759
|| ||| |||| || || ||||| || || | | ||||||||| | | | ||
Sbjct 63207 AATTTCTTAACTGCTGCGGTTTCTACTCCAGCAAATAGTATGGGTCATTCTTTATTATTT 63148
Query 170760 CTTTGGGGACCTGAAGCACAAGGTTCATTTGTTCGTTGGTTACAACTCGGAGGTTTATGG 170819
|||||||| || ||||| |||||| ||| |||||||| ||||| |||||| | |||
Sbjct 63147 CTTTGGGGCCCAGAAGCTCAAGGTGATTTTACTCGTTGGTGCCAACTTGGAGGTCTTTGG 63088
Query 170820 AACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCAGACAATTTGAG 170879
| || ||||| | || || ||| ||| || ||||| ||||| | ||||||||
Sbjct 63087 ACTTTCGTAGCCCTTCACGGTTCTTTTTCACTGATTGGTTTTATGCTTCGTCAATTTGAA 63028
Query 170880 ATCGCAGGACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCA 170939
|| || | ||| || | || || ||||| | || || |||||| || |
Sbjct 63027 ATTGCTCGTTCAGTAAAAATTCGTCCATATAACGCGATTGCTTTTTCTGCTCCAATTTCT 62968
Query 170940 GTCTTCACTAGCATCTTTCTGATCTATCCACTAGGTCAGCACAGTTGGTTCTTCGCACCA 170999
|| ||| | | || || || || ||| ||||||| |||||||||| ||||||
Sbjct 62967 GTTTTCGTTTCTGTGTTCCTAATTTACCCATTAGGTCAATCAGGTTGGTTCTTTGCACCA 62908
Query 171000 TCATTCGGTGTCGCAGCAATTTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATT 171059
|| ||||| || |||||||| |||| ||||||||| | ||||| ||||| |||
Sbjct 62907 AGTTTTGGTGTTGCGGCAATTTTCCGTTTTATCTTATTTTTTCAAGGCTTCCATAACTGG 62848
Query 171060 ACATTGAATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTATTATGT 171119
|| || || || || || ||||||||||| || || ||||||| | || ||| | ||
Sbjct 62847 ACTTTAAACCCTTTCCATATGATGGGTGTAGCTGGTGTACTAGGAGCTGCGTTACTTTGC 62788
Query 171120 GCCATTCATGGTGCAACAGTGCAGAACACATTGTATGAAGACACATCAGTTTATACTGAT 171179
|||||||||||||| || || | |||||| | | ||||| || ||||
Sbjct 62787 GCCATTCATGGTGCTACTGTAGAAAACACACTTTTTGAAG------------ATGGTGAT 62740
Query 171180 AATAAAATTCAAAGCACAACATTCCGTGCCTTTGATCCTACACAGGAAGAAGAAACTTAC 171239
| |||| ||||||||||| ||| | || || || | ||||||||| |||
Sbjct 62739 -----GGTGCAAA----CACATTCCGTGCGTTTAACCCAACTCAAGCAGAAGAAACATAC 62689
Query 171240 AGTATGATTACAGCAAACAGATTCTGGTCACAGATATTTGGTATTGCTTTCTCTAACAAA 171299
|||| | || || |||||||| ||||| || || |||||| | ||||| ||||| |||
Sbjct 62688 TCTATGGTAACTGCTAACAGATTTTGGTCTCAAATCTTTGGTGTAGCTTTTTCTAATAAA 62629
Query 171300 AGATTTTTACACTTCCTTATGTTGTTCGTTCCTGTCATGGGTATGTGGACATCATCTATA 171359
| | ||||||||| ||||| | || |||||||| | || | |||| ||||
Sbjct 62628 CGTTGGTTACACTTCTTTATGCTTTTTGTTCCTGTAACAGGGCTTTGGATGAGTGCTATT 62569
Query 171360 GGTATCGTAGGTCTAGCACTTAACCTCAGAGCATACGATTTTGTATCTCAAGAGATAAGA 171419
||| | ||||||||||| | ||| | | || |||||||| || || ||||| || |
Sbjct 62568 GGTGTAGTAGGTCTAGCTTTAAACTTACGTGCTTACGATTTCGTTTCACAAGAAATTCGC 62509
Query 171420 GCAGCAGAAGACCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGT 171479
|| |||||||| ||||| || || |||||||| || || ||||| ||| | || ||||||
Sbjct 62508 GCTGCAGAAGATCCAGAATTTGAAACTTTCTATACCAAAAATATCCTTTTAAACGAAGGT 62449
Query 171480 ATGAGAGCATGGATGTCATCAGTTGACCAACCACATGAGAACTTCGTATTCCCAGAAGAA 171539
|| | || |||||| | | || || || ||||| || | |||||||| || ||
Sbjct 62448 ATTCGTGCTTGGATGGCTGCTCAAGATCAGCCTCATGAAAAACTTGTATTCCCTGAGGAG 62389
Query 171540 GTGTTACCAAGAGGTAACGCACTTTAA 171566
|| |||||| | || ||||| ||||||
Sbjct 62388 GTTTTACCACGTGGAAACGCTCTTTAA 62362
Score = 345 bits (382), Expect = 5e-90
Identities = 393/525 (75%), Gaps = 2/525 (0%)
Strand=Plus/Minus
Query 169402 TTTTGCGAGTGGGTAACATCAACAAACAACAGAATCTATGTTGGTTGGTTTGGTGTTCTA 169461
||||| |||||||| || || | ||| | | || | |||||||||||||| ||
Sbjct 32746 TTTTGTGAGTGGGTTACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTATTA 32687
Query 169462 ATGATTCCATGCTTACTCACAGCAGCAGCA-TGTTTCATCGTTGCATTCATTGCAGCACC 169520
|||||||| ||| | || ||| | || ||||| ||| | || || || ||||||||
Sbjct 32686 ATGATTCCTACTTTATTAACTGCAACTTCAGTGTTT-ATCATCGCTTTTATCGCAGCACC 32628
Query 169521 TCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGTTCTTTCTTGTATGGTAACAA 169580
|||||| |||||||| || ||| | || ||||| | ||||| | || || || |||||
Sbjct 32627 TCCTGTTGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCACTTTTATACGGAAACAA 32568
Query 169581 CATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATCGGACTACACTTCTACCCAAT 169640
|||||| |||||||| || |||| | || ||||| ||||| |||| |||||||| ||
Sbjct 32567 CATCATTTCTGGTGCTATTATTCCTACTTCTAACGCAATCGGTTTACATTTCTACCCTAT 32508
Query 169641 CTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGTGGTCCTTATCAGTTGGTAAT 169700
||||||||||| || |||| |||||||| || || ||||||||||| || | | |
Sbjct 32507 TTGGGAAGCAGCTTCTCTTGACGAATGGTTATACAACGGTGGTCCTTACCAACTTATCGT 32448
Query 169701 CTTCCACTTCCTTATTGGTATCTCAGCATACATGGGAAGACAGTGGGAACTATCATACAG 169760
| || ||| | | || |||| | |||||||| | |||||||| |||| | | |
Sbjct 32447 TTGTCATTTCTTCTTAGGAATCTGTTCTTACATGGGTCGTGAGTGGGAATTATCTTTCCG 32388
Query 169761 ATTAGGAATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCATTCGC 169820
||||| |||||||| ||||| ||||| ||||| |||||||| |||| ||| ||
Sbjct 32387 TTTAGGTATGCGTCCATGGATTGCAGTTGCTTACTCAGCACCAGTTGCTGCAGCAACAGC 32328
Query 169821 TGTATTCTTAGTATACCCATTTGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTAT 169880
||||||| | | |||||| | ||||| ||||| ||||||||||||||||| |||||||
Sbjct 32327 TGTATTCATCATCTACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTAT 32268
Query 169881 CTCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGCAGAGCATAA 169925
|| ||||| || ||||| ||| |||| |||||||| ||||||||
Sbjct 32267 TTCTGGTACATTTAACTTCATGATCGTATTCCAAGCTGAGCATAA 32223
Score = 309 bits (342), Expect = 4e-79
Identities = 345/461 (75%), Gaps = 0/461 (0%)
Strand=Plus/Minus
Query 169924 AACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTCGGAGGATCTTTA 169983
|||||||||||||| || ||||| ||| ||| || || || | || || || || |||
Sbjct 31300 AACATTCTAATGCACCCATTCCATATGCTAGGCGTTGCCGGTGTATTTGGTGGTTCATTA 31241
Query 169984 TTCTCAGCAATGCATGGTTCACTTGTTACTTCATCTCTAATCAGAGAAACAACAGAGCAA 170043
||||| || ||||| ||||||||||| ||||| |||||||| | |||||||| ||| |
Sbjct 31240 TTCTCTGCTATGCACGGTTCACTTGTAACTTCTTCTCTAATTCGTGAAACAACTGAGAAC 31181
Query 170044 GAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGCA 170103
|| ||| ||| | ||||| || ||||| |||||||||||||| |||||||| || |||
Sbjct 31180 GAATCAGCTAACGAAGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCA 31121
Query 170104 GCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCATTCAACAACTCAAGAAGT 170163
|| || || ||||| |||||| | || ||||| || ||||| || |||||||| |
Sbjct 31120 GCTCATGGCTACTTCGGTCGTTTAATTTTCCAATACGCTTCTTTTAACAACTCTCGTTCA 31061
Query 170164 CTACACTTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATC 170223
|||| |||||| |||| | || || ||||| || | ||||| || || | |||||
Sbjct 31060 TTACATTTCTTCTTAGCTGCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGTATT 31001
Query 170224 TGCACAATGGCATTCAACTTGAATGGTTTCAACTTTAACCAATCAGTTGTTGATGCTAAC 170283
| || ||||| |||||||| |||||||||||||| |||||||||||||| ||| | |
Sbjct 31000 TCAACTATGGCTTTCAACTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAA 30941
Query 170284 GGAAAAATCGTCCCAACATGGGGTGATGTTCTAAACAGAGCAAACTTGGGTATGGAAGTT 170343
|| | | || |||| ||| || | ||| | || ||| | |||||||||||
Sbjct 30940 GGCCGTGTTATTAACACTTGGGCTGACATTATCAACCGTGCCAACCTTGGTATGGAAGTA 30881
Query 170344 ATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGC 170384
|||||||| | || || ||||||||||| |||| ||||
Sbjct 30880 ATGCATGAGCGTAACGCTCACAACTTCCCGTTAGATTTAGC 30840
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 579186735424000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |