Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq2029 466 2e-126 >seq2029 Length=64692 Score = 466 bits (516), Expect = 2e-126 Identities = 731/1047 (70%), Gaps = 27/1047 (3%) Strand=Plus/Minus Query 170523 GGTTGGTTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGATGG 170582 |||| |||||||||| |||| |||||| | | || ||||| || || |||||||| Sbjct 63384 GGTTTGTTTGATGTTGTTGATGACTGGCTTCGTCGCGACCGTTTCGTTTTTGTAGGATGG 63325 Query 170583 TCTGGT---CTTTTACTTCTGCCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGGG 170639 || || |||||| | | | || ||||| || || | ||||||||||| ||| Sbjct 63324 TCAGGGTTACTTTTATTCCCGACT---GCATATCTTGCACTTGGTGGTTGGTTTACAGGA 63268 Query 170640 ACTACCTTCGTTACATCATGGTATACACATGGTGTTGCTTCCTCATATCTTGAGGGATGT 170699 ||||| || || || || |||||||| |||||| | ||| | |||||| | || || ||| Sbjct 63267 ACTACATTTGTAACTTCTTGGTATACTCATGGTTTAGCTACTTCATATTTAGAAGGCTGT 63208 Query 170700 AACTTCCTAACAGCAGCAGTTTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTC 170759 || ||| |||| || || ||||| || || | | ||||||||| | | | || Sbjct 63207 AATTTCTTAACTGCTGCGGTTTCTACTCCAGCAAATAGTATGGGTCATTCTTTATTATTT 63148 Query 170760 CTTTGGGGACCTGAAGCACAAGGTTCATTTGTTCGTTGGTTACAACTCGGAGGTTTATGG 170819 |||||||| || ||||| |||||| ||| |||||||| ||||| |||||| | ||| Sbjct 63147 CTTTGGGGCCCAGAAGCTCAAGGTGATTTTACTCGTTGGTGCCAACTTGGAGGTCTTTGG 63088 Query 170820 AACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCAGACAATTTGAG 170879 | || ||||| | || || ||| ||| || ||||| ||||| | |||||||| Sbjct 63087 ACTTTCGTAGCCCTTCACGGTTCTTTTTCACTGATTGGTTTTATGCTTCGTCAATTTGAA 63028 Query 170880 ATCGCAGGACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCA 170939 || || | ||| || | || || ||||| | || || |||||| || | Sbjct 63027 ATTGCTCGTTCAGTAAAAATTCGTCCATATAACGCGATTGCTTTTTCTGCTCCAATTTCT 62968 Query 170940 GTCTTCACTAGCATCTTTCTGATCTATCCACTAGGTCAGCACAGTTGGTTCTTCGCACCA 170999 || ||| | | || || || || ||| ||||||| |||||||||| |||||| Sbjct 62967 GTTTTCGTTTCTGTGTTCCTAATTTACCCATTAGGTCAATCAGGTTGGTTCTTTGCACCA 62908 Query 171000 TCATTCGGTGTCGCAGCAATTTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATT 171059 || ||||| || |||||||| |||| ||||||||| | ||||| ||||| ||| Sbjct 62907 AGTTTTGGTGTTGCGGCAATTTTCCGTTTTATCTTATTTTTTCAAGGCTTCCATAACTGG 62848 Query 171060 ACATTGAATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTATTATGT 171119 || || || || || || ||||||||||| || || ||||||| | || ||| | || Sbjct 62847 ACTTTAAACCCTTTCCATATGATGGGTGTAGCTGGTGTACTAGGAGCTGCGTTACTTTGC 62788 Query 171120 GCCATTCATGGTGCAACAGTGCAGAACACATTGTATGAAGACACATCAGTTTATACTGAT 171179 |||||||||||||| || || | |||||| | | ||||| || |||| Sbjct 62787 GCCATTCATGGTGCTACTGTAGAAAACACACTTTTTGAAG------------ATGGTGAT 62740 Query 171180 AATAAAATTCAAAGCACAACATTCCGTGCCTTTGATCCTACACAGGAAGAAGAAACTTAC 171239 | |||| ||||||||||| ||| | || || || | ||||||||| ||| Sbjct 62739 -----GGTGCAAA----CACATTCCGTGCGTTTAACCCAACTCAAGCAGAAGAAACATAC 62689 Query 171240 AGTATGATTACAGCAAACAGATTCTGGTCACAGATATTTGGTATTGCTTTCTCTAACAAA 171299 |||| | || || |||||||| ||||| || || |||||| | ||||| ||||| ||| Sbjct 62688 TCTATGGTAACTGCTAACAGATTTTGGTCTCAAATCTTTGGTGTAGCTTTTTCTAATAAA 62629 Query 171300 AGATTTTTACACTTCCTTATGTTGTTCGTTCCTGTCATGGGTATGTGGACATCATCTATA 171359 | | ||||||||| ||||| | || |||||||| | || | |||| |||| Sbjct 62628 CGTTGGTTACACTTCTTTATGCTTTTTGTTCCTGTAACAGGGCTTTGGATGAGTGCTATT 62569 Query 171360 GGTATCGTAGGTCTAGCACTTAACCTCAGAGCATACGATTTTGTATCTCAAGAGATAAGA 171419 ||| | ||||||||||| | ||| | | || |||||||| || || ||||| || | Sbjct 62568 GGTGTAGTAGGTCTAGCTTTAAACTTACGTGCTTACGATTTCGTTTCACAAGAAATTCGC 62509 Query 171420 GCAGCAGAAGACCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGT 171479 || |||||||| ||||| || || |||||||| || || ||||| ||| | || |||||| Sbjct 62508 GCTGCAGAAGATCCAGAATTTGAAACTTTCTATACCAAAAATATCCTTTTAAACGAAGGT 62449 Query 171480 ATGAGAGCATGGATGTCATCAGTTGACCAACCACATGAGAACTTCGTATTCCCAGAAGAA 171539 || | || |||||| | | || || || ||||| || | |||||||| || || Sbjct 62448 ATTCGTGCTTGGATGGCTGCTCAAGATCAGCCTCATGAAAAACTTGTATTCCCTGAGGAG 62389 Query 171540 GTGTTACCAAGAGGTAACGCACTTTAA 171566 || |||||| | || ||||| |||||| Sbjct 62388 GTTTTACCACGTGGAAACGCTCTTTAA 62362 Score = 345 bits (382), Expect = 5e-90 Identities = 393/525 (75%), Gaps = 2/525 (0%) Strand=Plus/Minus Query 169402 TTTTGCGAGTGGGTAACATCAACAAACAACAGAATCTATGTTGGTTGGTTTGGTGTTCTA 169461 ||||| |||||||| || || | ||| | | || | |||||||||||||| || Sbjct 32746 TTTTGTGAGTGGGTTACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTATTA 32687 Query 169462 ATGATTCCATGCTTACTCACAGCAGCAGCA-TGTTTCATCGTTGCATTCATTGCAGCACC 169520 |||||||| ||| | || ||| | || ||||| ||| | || || || |||||||| Sbjct 32686 ATGATTCCTACTTTATTAACTGCAACTTCAGTGTTT-ATCATCGCTTTTATCGCAGCACC 32628 Query 169521 TCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGTTCTTTCTTGTATGGTAACAA 169580 |||||| |||||||| || ||| | || ||||| | ||||| | || || || ||||| Sbjct 32627 TCCTGTTGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCACTTTTATACGGAAACAA 32568 Query 169581 CATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATCGGACTACACTTCTACCCAAT 169640 |||||| |||||||| || |||| | || ||||| ||||| |||| |||||||| || Sbjct 32567 CATCATTTCTGGTGCTATTATTCCTACTTCTAACGCAATCGGTTTACATTTCTACCCTAT 32508 Query 169641 CTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGTGGTCCTTATCAGTTGGTAAT 169700 ||||||||||| || |||| |||||||| || || ||||||||||| || | | | Sbjct 32507 TTGGGAAGCAGCTTCTCTTGACGAATGGTTATACAACGGTGGTCCTTACCAACTTATCGT 32448 Query 169701 CTTCCACTTCCTTATTGGTATCTCAGCATACATGGGAAGACAGTGGGAACTATCATACAG 169760 | || ||| | | || |||| | |||||||| | |||||||| |||| | | | Sbjct 32447 TTGTCATTTCTTCTTAGGAATCTGTTCTTACATGGGTCGTGAGTGGGAATTATCTTTCCG 32388 Query 169761 ATTAGGAATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCATTCGC 169820 ||||| |||||||| ||||| ||||| ||||| |||||||| |||| ||| || Sbjct 32387 TTTAGGTATGCGTCCATGGATTGCAGTTGCTTACTCAGCACCAGTTGCTGCAGCAACAGC 32328 Query 169821 TGTATTCTTAGTATACCCATTTGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTAT 169880 ||||||| | | |||||| | ||||| ||||| ||||||||||||||||| ||||||| Sbjct 32327 TGTATTCATCATCTACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTAT 32268 Query 169881 CTCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGCAGAGCATAA 169925 || ||||| || ||||| ||| |||| |||||||| |||||||| Sbjct 32267 TTCTGGTACATTTAACTTCATGATCGTATTCCAAGCTGAGCATAA 32223 Score = 309 bits (342), Expect = 4e-79 Identities = 345/461 (75%), Gaps = 0/461 (0%) Strand=Plus/Minus Query 169924 AACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTCGGAGGATCTTTA 169983 |||||||||||||| || ||||| ||| ||| || || || | || || || || ||| Sbjct 31300 AACATTCTAATGCACCCATTCCATATGCTAGGCGTTGCCGGTGTATTTGGTGGTTCATTA 31241 Query 169984 TTCTCAGCAATGCATGGTTCACTTGTTACTTCATCTCTAATCAGAGAAACAACAGAGCAA 170043 ||||| || ||||| ||||||||||| ||||| |||||||| | |||||||| ||| | Sbjct 31240 TTCTCTGCTATGCACGGTTCACTTGTAACTTCTTCTCTAATTCGTGAAACAACTGAGAAC 31181 Query 170044 GAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGCA 170103 || ||| ||| | ||||| || ||||| |||||||||||||| |||||||| || ||| Sbjct 31180 GAATCAGCTAACGAAGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCA 31121 Query 170104 GCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCATTCAACAACTCAAGAAGT 170163 || || || ||||| |||||| | || ||||| || ||||| || |||||||| | Sbjct 31120 GCTCATGGCTACTTCGGTCGTTTAATTTTCCAATACGCTTCTTTTAACAACTCTCGTTCA 31061 Query 170164 CTACACTTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATC 170223 |||| |||||| |||| | || || ||||| || | ||||| || || | ||||| Sbjct 31060 TTACATTTCTTCTTAGCTGCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGTATT 31001 Query 170224 TGCACAATGGCATTCAACTTGAATGGTTTCAACTTTAACCAATCAGTTGTTGATGCTAAC 170283 | || ||||| |||||||| |||||||||||||| |||||||||||||| ||| | | Sbjct 31000 TCAACTATGGCTTTCAACTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAA 30941 Query 170284 GGAAAAATCGTCCCAACATGGGGTGATGTTCTAAACAGAGCAAACTTGGGTATGGAAGTT 170343 || | | || |||| ||| || | ||| | || ||| | ||||||||||| Sbjct 30940 GGCCGTGTTATTAACACTTGGGCTGACATTATCAACCGTGCCAACCTTGGTATGGAAGTA 30881 Query 170344 ATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGC 170384 |||||||| | || || ||||||||||| |||| |||| Sbjct 30880 ATGCATGAGCGTAACGCTCACAACTTCCCGTTAGATTTAGC 30840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579186735424000