Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq2029 419 3e-112 >seq2029 Length=64692 Score = 419 bits (464), Expect = 3e-112 Identities = 723/1048 (69%), Gaps = 29/1048 (3%) Strand=Plus/Minus Query 172945 GGTTGGTTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGG 173004 |||| |||||||||| |||| |||||| | | || |||||||| || | |||||| Sbjct 63384 GGTTTGTTTGATGTTGTTGATGACTGGCTTCGTCGCGACCGTTTCGTTTTTGTAGGATGG 63325 Query 173005 TCTGGTCTTTTACTTCTA---CCTTGTGCTTACCTTTCTATCGGTGGTTGGTTCTTAGGA 173061 || || |||||| || || ||| || ||| | | ||||||||||| |||| Sbjct 63324 TCAGGG---TTACTTTTATTCCCGACTGCATATCTTGCACTTGGTGGTTGGTTTACAGGA 63268 Query 173062 ACTACCTTCGTTACATCATGGTATACACATGGTATTGCATCTTCATATCTTGAAGGAGCA 173121 ||||| || || || || |||||||| |||||| | || |||||||| | ||||| Sbjct 63267 ACTACATTTGTAACTTCTTGGTATACTCATGGTTTAGCTACTTCATATTTAGAAGGCTGT 63208 Query 173122 AACTTTTTAACAGCAGCAGTCTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTC 173181 || || ||||| || || || || || || | | ||||||||| | | | || Sbjct 63207 AATTTCTTAACTGCTGCGGTTTCTACTCCAGCAAATAGTATGGGTCATTCTTTATTATTT 63148 Query 173182 CTTTGGGGACCTGAAGCACAAGGTTCATTCGTACGTTGGTTACAACTCGGAGGACTATGG 173241 |||||||| || ||||| |||||| || ||||||| ||||| ||||| || ||| Sbjct 63147 CTTTGGGGCCCAGAAGCTCAAGGTGATTTTACTCGTTGGTGCCAACTTGGAGGTCTTTGG 63088 Query 173242 AACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCCGTCAGTTTGAG 173301 | || ||||| | || || ||| ||| || ||||| ||||| ||||| ||||| Sbjct 63087 ACTTTCGTAGCCCTTCACGGTTCTTTTTCACTGATTGGTTTTATGCTTCGTCAATTTGAA 63028 Query 173302 ATCGCAGGACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCA 173361 || || | ||| || | || || ||||| | || || |||||| || | Sbjct 63027 ATTGCTCGTTCAGTAAAAATTCGTCCATATAACGCGATTGCTTTTTCTGCTCCAATTTCT 62968 Query 173362 GTCTTCACTAGCATCTTTTTAATCTACCCACTAGGGCAGCACAGTTGGTTCTTCGCACCT 173421 || ||| | | || |||| |||||| |||| || |||||||||| ||||| Sbjct 62967 GTTTTCGTTTCTGTGTTCCTAATTTACCCATTAGGTCAATCAGGTTGGTTCTTTGCACCA 62908 Query 173422 TCATTCGGTGTCGCAGCAATCTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATT 173481 || ||||| || ||||| || |||| ||||||||| | ||||| ||||| ||| Sbjct 62907 AGTTTTGGTGTTGCGGCAATTTTCCGTTTTATCTTATTTTTTCAAGGCTTCCATAACTGG 62848 Query 173482 ACATTGAATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTACTATGT 173541 || || || || || || ||||||||||| || || ||||||| | || ||||| || Sbjct 62847 ACTTTAAACCCTTTCCATATGATGGGTGTAGCTGGTGTACTAGGAGCTGCGTTACTTTGC 62788 Query 173542 GCCATTCATGGTGCAACAGTGCAGAACACATTGTATGAAGACACATCACAATATACTGAA 173601 |||||||||||||| || || | |||||| | | ||||| || ||| Sbjct 62787 GCCATTCATGGTGCTACTGTAGAAAACACACTTTTTGAAG------------ATGGTGAT 62740 Query 173602 GGTAAGATTCAATCCACAACTTTCAGAGCATTTGATCCTACACAGGAAGAAGAAACTTAT 173661 || | ||| | || ||| | || ||| | || || || | ||||||||| || Sbjct 62739 GG-----TGCAAAC----ACATTCCGTGCGTTTAACCCAACTCAAGCAGAAGAAACATAC 62689 Query 173662 AGTATGATTACAGCGAACAGATTCTGGTCACAGATATTTGGTATCGCATTTTCAAACAAA 173721 |||| | || || |||||||| ||||| || || |||||| | || ||||| || ||| Sbjct 62688 TCTATGGTAACTGCTAACAGATTTTGGTCTCAAATCTTTGGTGTAGCTTTTTCTAATAAA 62629 Query 173722 AGATTTTTACACTTCCTCATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCCATA 173781 | | ||||||||| | ||| | || || ||||| | || | |||| | || Sbjct 62628 CGTTGGTTACACTTCTTTATGCTTTTTGTTCCTGTAACAGGGCTTTGGATGAGTGCTATT 62569 Query 173782 GGTATCGTAGGTCTTGCACTTAACCTTA-GAGCATACGACTTTGTATCTCAAGAGATAAG 173840 ||| | |||||||| || |||| |||| | || ||||| || || || ||||| || | Sbjct 62568 GGTGTAGTAGGTCTAGC-TTTAAACTTACGTGCTTACGATTTCGTTTCACAAGAAATTCG 62510 Query 173841 AGCAGCAGAAGATCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGG 173900 || |||||||||||||| || || |||||||| || || ||||| ||| | || ||||| Sbjct 62509 CGCTGCAGAAGATCCAGAATTTGAAACTTTCTATACCAAAAATATCCTTTTAAACGAAGG 62450 Query 173901 TATGAGAGCATGGATGTCATCTGTAGATCAACCACATGAGAACTTCGTATTTCCAGAAGA 173960 ||| | || |||||| | || |||||| || ||||| || | ||||| || || || Sbjct 62449 TATTCGTGCTTGGATGGCTGCTCAAGATCAGCCTCATGAAAAACTTGTATTCCCTGAGGA 62390 Query 173961 AGTGTTACCAAGAGGTAACGCACTTTAA 173988 || |||||| | || ||||| |||||| Sbjct 62389 GGTTTTACCACGTGGAAACGCTCTTTAA 62362 Score = 324 bits (358), Expect = 2e-83 Identities = 361/482 (75%), Gaps = 0/482 (0%) Strand=Plus/Minus Query 171862 GGTTGGTTCGGTGTACTCATGATCCCATGTTTGCTCACAGCAGCAGCATGCTTCATCGTT 171921 |||||||| |||||| | ||||| || ||| | || ||| | || || ||| | Sbjct 32704 GGTTGGTTTGGTGTATTAATGATTCCTACTTTATTAACTGCAACTTCAGTGTTTATCATC 32645 Query 171922 GCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCT 171981 || || || |||||||||||||| |||||||| || ||| | || |||||| | ||||| Sbjct 32644 GCTTTTATCGCAGCACCTCCTGTTGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCA 32585 Query 171982 TTCTTATATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCAATAGGT 172041 | ||||| || ||||||||||| |||||||| || |||| | || |||||||| ||| Sbjct 32584 CTTTTATACGGAAACAACATCATTTCTGGTGCTATTATTCCTACTTCTAACGCAATCGGT 32525 Query 172042 CTCCACTTCTACCCTATCTGGGAAGCAGCAACCGTAGATGAATGGTTGTACAATGGTGGT 172101 | || ||||||||||| ||||||||||| | | || |||||||| ||||| |||||| Sbjct 32524 TTACATTTCTACCCTATTTGGGAAGCAGCTTCTCTTGACGAATGGTTATACAACGGTGGT 32465 Query 172102 CCTTATCAGTTGGTAATCTTCCACTTCCTTATCGGTATCTCAGCATACATGGGAAGACAG 172161 ||||| || | | | | || ||| | | || |||| | |||||||| | || Sbjct 32464 CCTTACCAACTTATCGTTTGTCATTTCTTCTTAGGAATCTGTTCTTACATGGGTCGTGAG 32405 Query 172162 TGGGAACTATCATACAGATTAGGTATGAGACCATGGATATGTGTAGCATATTCAGCACCT 172221 |||||| |||| | | | ||||||||| | |||||||| || || || |||||||| Sbjct 32404 TGGGAATTATCTTTCCGTTTAGGTATGCGTCCATGGATTGCAGTTGCTTACTCAGCACCA 32345 Query 172222 GTATCAGCAGCATTTGCTGTGTTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGAT 172281 || | |||||| ||||| ||| | | || ||| ||||||| ||||| ||||||||| Sbjct 32344 GTTGCTGCAGCAACAGCTGTATTCATCATCTACCCAATCGGTCAAGGTTCTTTCTCTGAT 32285 Query 172282 GGTATGCCACTAGGTATCTCAGGTACGTTCAACTTTATGTTCGTGTTCCAAGCAGAGCAT 172341 |||||||| ||||||| || ||||| || ||||| ||| |||| |||||||| |||||| Sbjct 32284 GGTATGCCTTTAGGTATTTCTGGTACATTTAACTTCATGATCGTATTCCAAGCTGAGCAT 32225 Query 172342 AA 172343 || Sbjct 32224 AA 32223 Score = 320 bits (354), Expect = 2e-82 Identities = 344/455 (76%), Gaps = 0/455 (0%) Strand=Plus/Minus Query 172342 AACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTTGGAGGATCTTTA 172401 |||||||||||||| || ||||| ||| ||| || || || | ||||| || || ||| Sbjct 31300 AACATTCTAATGCACCCATTCCATATGCTAGGCGTTGCCGGTGTATTTGGTGGTTCATTA 31241 Query 172402 TTCTCAGCAATGCACGGTTCTTTAGTTACATCTTCTCTAATCAGAGAGACAACTGAAGCA 172461 ||||| || ||||||||||| | || || ||||||||||| | || |||||||| Sbjct 31240 TTCTCTGCTATGCACGGTTCACTTGTAACTTCTTCTCTAATTCGTGAAACAACTGAGAAC 31181 Query 172462 GAATCACAGAACTACGGATACAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGCA 172521 |||||| ||| | || ||||| ||||| |||||||||||||| |||||||| || ||| Sbjct 31180 GAATCAGCTAACGAAGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCA 31121 Query 172522 GCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAACAACTCAAGAAGT 172581 || || || ||||| |||||| | || ||||| || |||||||| |||||||| | Sbjct 31120 GCTCATGGCTACTTCGGTCGTTTAATTTTCCAATACGCTTCTTTTAACAACTCTCGTTCA 31061 Query 172582 CTTCACTTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATC 172641 | || |||||| |||| | || || ||||| || | ||||| || || | ||||| Sbjct 31060 TTACATTTCTTCTTAGCTGCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGTATT 31001 Query 172642 TGTACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCAGTTGTAGATGCTAAC 172701 | || ||||| |||||| | || |||||||||||||||||||||||||||||| | | Sbjct 31000 TCAACTATGGCTTTCAACTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAA 30941 Query 172702 GGTAAGATTGTTCCTACATGGGGTGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTT 172761 || || || || |||| |||| || | ||| | || ||||| ||||||||||| Sbjct 30940 GGCCGTGTTATTAACACTTGGGCTGACATTATCAACCGTGCCAACCTTGGTATGGAAGTA 30881 Query 172762 ATGCATGAAAGAAATGCACACAACTTCCCATTAGA 172796 |||||||| | || || ||||||||||| ||||| Sbjct 30880 ATGCATGAGCGTAACGCTCACAACTTCCCGTTAGA 30846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588024737696000