Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05]
3,600 sequences; 37,342,230 total letters
Query= NC_015287.1
Length=232878
Score E
Sequences producing significant alignments: (Bits) Value
seq2029 381 9e-101
>seq2029
Length=64692
Score = 381 bits (422), Expect = 9e-101
Identities = 367/471 (78%), Gaps = 0/471 (0%)
Strand=Plus/Minus
Query 215816 AACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTG 215875
|||||||| |||||||||||||| ||| |||| || || ||||| || |||||||||||
Sbjct 31300 AACATTCTAATGCACCCATTCCATATGCTAGGCGTTGCCGGTGTATTTGGTGGTTCATTA 31241
Query 215876 TTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTAATCAGAGAGACAACTGAGCAA 215935
|||||||| ||||||||||||||||| || ||||||||||| | || ||||||||| |
Sbjct 31240 TTCTCTGCTATGCACGGTTCACTTGTAACTTCTTCTCTAATTCGTGAAACAACTGAGAAC 31181
Query 215936 GAATCTCAGAACTACGGTTACAAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCT 215995
||||| ||| | |||||||| ||||| ||||| || ||||| ||||||||||| ||
Sbjct 31180 GAATCAGCTAACGAAGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCA 31121
Query 215996 GCACACGGTTACTTTGGTCGCCTCATCTTCCAATACGCATCTTTCAACAACTCAAGAAGT 216055
|| || || ||||| ||||| | || ||||||||||| ||||| |||||||| |
Sbjct 31120 GCTCATGGCTACTTCGGTCGTTTAATTTTCCAATACGCTTCTTTTAACAACTCTCGTTCA 31061
Query 216056 CTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTGTATCTGGGCAACTGCAATGGGTGTC 216115
| || |||||| | || || | || ||| || |||| ||| ||||| | ||| |
Sbjct 31060 TTACATTTCTTCTTAGCTGCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGTATT 31001
Query 216116 TCAACTATGGCGTTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCGTAGACGCATCT 216175
||||||||||| |||||| | || ||||||||||||||||| || || ||||| ||
Sbjct 31000 TCAACTATGGCTTTCAACTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAA 30941
Query 216176 GGTAAAGTTATTCCTACTTGGGCAGACGTTCTTAACAGAGCAGGACTTGGTATGGAAGTA 216235
|| |||||| |||||||| ||| || | ||| | || |||||||||||||||
Sbjct 30940 GGCCGTGTTATTAACACTTGGGCTGACATTATCAACCGTGCCAACCTTGGTATGGAAGTA 30881
Query 216236 ATGCACGAGCGTAACGCTCACAACTTCCCATTAGACTTGGCTGCTGCTGAA 216286
||||| ||||||||||||||||||||||| ||||| || || | || ||||
Sbjct 30880 ATGCATGAGCGTAACGCTCACAACTTCCCGTTAGATTTAGCGGTTGTTGAA 30830
Score = 358 bits (396), Expect = 1e-93
Identities = 396/525 (75%), Gaps = 2/525 (0%)
Strand=Plus/Minus
Query 215294 TTTTGTGAGTGGGTTACTTCTACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTC 215353
|||||||||||||||||| ||||| || ||| | ||| | |||||||||||||| |
Sbjct 32746 TTTTGTGAGTGGGTTACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTATTA 32687
Query 215354 ATGATTCCTTGCCTCCTCGCAGCTACCACT-TGTTTCATCGTAGCATTCATCGCTGCACC 215412
||||||||| | | | || || | ||||| ||| | || || ||||| |||||
Sbjct 32686 ATGATTCCTACTTTATTAACTGCAACTTCAGTGTTT-ATCATCGCTTTTATCGCAGCACC 32628
Query 215413 TCCTGTCGATATCGACGGAATCAGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAA 215472
|||||| |||||||| || ||| | ||||||||| ||||||| | | || || |||||
Sbjct 32627 TCCTGTTGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCACTTTTATACGGAAACAA 32568
Query 215473 CATCATCTCTGGTGCTGTTGTACCTAGTTCAAACGCAATCGGATTACACTTCTACCCTAT 215532
|||||| ||||||||| || | |||| ||| ||||||||||| ||||| |||||||||||
Sbjct 32567 CATCATTTCTGGTGCTATTATTCCTACTTCTAACGCAATCGGTTTACATTTCTACCCTAT 32508
Query 215533 CTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTAT 215592
||||||||||| | ||||||||||| | ||||| ||||| |||| |||||| | |
Sbjct 32507 TTGGGAAGCAGCTTCTCTTGACGAATGGTTATACAACGGTGGTCCTTACCAACTTATCGT 32448
Query 215593 CTTCCACTTCCTCATTGGTATTTCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAG 215652
| || ||| || | || || | | | ||| || | |||||||| | |||| | |
Sbjct 32447 TTGTCATTTCTTCTTAGGAATCTGTTCTTACATGGGTCGTGAGTGGGAATTATCTTTCCG 32388
Query 215653 ATTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGC 215712
||||||||| | || ||||| ||||||||||| ||||| || |||| || ||
Sbjct 32387 TTTAGGTATGCGTCCATGGATTGCAGTTGCTTACTCAGCACCAGTTGCTGCAGCAACAGC 32328
Query 215713 AGTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAAT 215772
|||||| | | || ||| ||||||| |||||||||||||||| |||||| | || ||
Sbjct 32327 TGTATTCATCATCTACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTAT 32268
Query 215773 CTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCACAA 215817
||||| ||||| |||| |||| | || ||||| |||||||| ||
Sbjct 32267 TTCTGGTACATTTAACTTCATGATCGTATTCCAAGCTGAGCATAA 32223
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 745048071328000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |