Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq2029 619 2e-172 >seq2029 Length=64692 Score = 619 bits (686), Expect = 2e-172 Identities = 756/1023 (74%), Gaps = 6/1023 (1%) Strand=Plus/Minus Query 183180 GTTCGATGTCCTTGATGACTGGGTTAAACGCGATCGCTTTGTCTTTGTGGGCTGGTCTGG 183239 ||| ||||| ||||||||||| || ||||| || || || ||||| || ||||| || Sbjct 63379 GTTTGATGTTGTTGATGACTGGCTTCGTCGCGACCGTTTCGTTTTTGTAGGATGGTCAGG 63320 Query 183240 ACTCCTACTTCTTCCC-ACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGCTT 183298 | || || ||||| ||||| |||||||| |||| |||||| |||| || || | | Sbjct 63319 GTTACTT-TTATTCCCGACTGCATATCTTGCACTTGGTGGTTGGTTTACAGGAACTACAT 63261 Query 183299 TTGTTACGAGTTGGTATACCCATGGACTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTC 183358 |||| || ||||||||| ||||| | ||| |||| ||| | ||||| ||| |||| Sbjct 63260 TTGTAACTTCTTGGTATACTCATGGTTTAGCTACTTCATATTTAGAAGGCTGTAA-TTTC 63202 Query 183359 TTA-CGGCAGCTGTCTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTGTTACTTTGG 183417 ||| | || || || || || || || | ||||||||||||| | | || |||||| Sbjct 63201 TTAACTGCTGCGGTTTCTACTCCAGCAAATAGTATGGGTCATTCTTTATTATTTCTTTGG 63142 Query 183418 GGTCCTGAGTCTCAAGGGGACTTTCAACGCTGGTGCCAACTTGGGGGACTCTGGAATTTT 183477 || || || ||||||| || ||| || |||||||||||||| || || |||| ||| Sbjct 63141 GGCCCAGAAGCTCAAGGTGATTTTACTCGTTGGTGCCAACTTGGAGGTCTTTGGACTTTC 63082 Query 183478 GTGGCACTCCACGGTGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGCT 183537 || || || |||||| | ||| | || |||||||| |||||||| || |||||| ||||| Sbjct 63081 GTAGCCCTTCACGGTTCTTTTTCACTGATTGGTTTTATGCTTCGTCAATTTGAAATTGCT 63022 Query 183538 CGCTTGATTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTT 183597 || | | || ||||| || || || ||||| || |||| ||| ||| ||||||| Sbjct 63021 CGTTCAGTAAAAATTCGTCCATATAACGCGATTGCTTTTTCTGCTCCAATTTCTGTTTTC 62962 Query 183598 GTCAGTGTATTCCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTC 183657 || ||| ||||| || || ||| | ||||| || |||||||||||||| ||||| Sbjct 62961 GTTTCTGTGTTCCTAATTTACCCATTAGGTCAATCAGGTTGGTTCTTTGCACCAAGTTTT 62902 Query 183658 GGGGTAGCAGCAATCTTTAGATTCCTATTGTTCCTTCAGGGTTTCCACAACTGGACGTTA 183717 || || || ||||| || | || | || || |||| || ||||| |||||||| ||| Sbjct 62901 GGTGTTGCGGCAATTTTCCGTTTTATCTTATTTTTTCAAGGCTTCCATAACTGGACTTTA 62842 Query 183718 AACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTACTCAGTGCTATC 183777 ||||| |||||||||||||| || |||||| ||||||||| || |||| | || || Sbjct 62841 AACCCTTTCCATATGATGGGTGTAGCTGGTGTACTAGGAGCTGCGTTACTTTGCGCCATT 62782 Query 183778 CATGGTGTCACAGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTCAAG 183837 ||||||| || ||||| || ||| | | ||||||||| || |||||||||||| Sbjct 62781 CATGGTGCTACTGTAGAAAACACACTTTTTGAAGATGGTGATGGTGCAAACACATTCCGT 62722 Query 183838 GCATTTGATTCCACTCAAGAAGAAGAGACGTATTCTATGGTTACAGCGAATCGTTTCTGG 183897 || ||| | | ||||||| |||||| || || |||||||| || || || | || ||| Sbjct 62721 GCGTTTAACCCAACTCAAGCAGAAGAAACATACTCTATGGTAACTGCTAACAGATTTTGG 62662 Query 183898 TCACAAATCTTCGGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTT 183957 || |||||||| || || || ||| ||||| |||||||| |||||||||||| | ||| Sbjct 62661 TCTCAAATCTTTGGTGTAGCTTTTTCTAATAAACGTTGGTTACACTTCTTTATGCTTTTT 62602 Query 183958 GTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTTGCTCTTAATCTT 184017 |||||||| | || |||||| | | ||||||| | | || || ||| |||| ||| Sbjct 62601 GTTCCTGTAACAGGGCTTTGGATGAGTGCTATTGGTGTAGTAGGTCTAGCT-TTAAACTT 62543 Query 184018 -CGTGCTTATGATTTTGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGAC 184076 |||||||| ||||| || ||||| || | || |||||||||||||||||||| || Sbjct 62542 ACGTGCTTACGATTTCGTTTCACAAGAAATTCGCGCTGCAGAAGATCCAGAATTTGAAAC 62483 Query 184077 GTTCTACACAAAGAACATACTTCTTAATGAAGGACTACGTGCATGGTTAGCACCTTCTGA 184136 ||||| || || || || ||| | || ||||| | ||||| ||| | || || || Sbjct 62482 TTTCTATACCAAAAATATCCTTTTAAACGAAGGTATTCGTGCTTGGATGGCTGCTCAAGA 62423 Query 184137 TCAACCACATGAGAATTTTATATTTCCAGAGGAGGTATTACCTAGAGGCAATGCTCTTTG 184196 ||| || ||||| || || |||| || |||||||| ||||| | || || ||||||| Sbjct 62422 TCAGCCTCATGAAAAACTTGTATTCCCTGAGGAGGTTTTACCACGTGGAAACGCTCTTTA 62363 Query 184197 ATG 184199 ||| Sbjct 62362 ATG 62360 Score = 398 bits (440), Expect = 9e-106 Identities = 370/470 (79%), Gaps = 0/470 (0%) Strand=Plus/Minus Query 182316 AACATTCTTATGCATCCCTTCCACATGTTGGGTGTAGCAGGTGTATTCGGTGGTTCACTG 182375 |||||||| ||||| || ||||| ||| | || || || |||||||| ||||||||| | Sbjct 31300 AACATTCTAATGCACCCATTCCATATGCTAGGCGTTGCCGGTGTATTTGGTGGTTCATTA 31241 Query 182376 TTTAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAGCAA 182435 || ||| ||||||||||| | || || ||||| || | ||||| || |||||| | Sbjct 31240 TTCTCTGCTATGCACGGTTCACTTGTAACTTCTTCTCTAATTCGTGAAACAACTGAGAAC 31181 Query 182436 GAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTATAACATCGTTGCA 182495 || ||| ||| | |||||||| ||||||||||||||||| || || |||||||||||| Sbjct 31180 GAATCAGCTAACGAAGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCA 31121 Query 182496 GCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCATCATTCAACAACTCCCGTTCC 182555 || |||||||||||||||||||| || ||||||||||| || || |||||||| ||||| Sbjct 31120 GCTCATGGCTACTTCGGTCGTTTAATTTTCCAATACGCTTCTTTTAACAACTCTCGTTCA 31061 Query 182556 TTGCACTTCTTCCTTGCTGCATGGCCTGTTGTTGGAATCTGGTTCACCGCACTTGGTGTC 182615 || || |||||| | ||||| ||||| |||||||| || ||||| || || | ||| | Sbjct 31060 TTACATTTCTTCTTAGCTGCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGTATT 31001 Query 182616 TCCACGATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAG 182675 || || ||||| |||||| | || ||||||||||||||||| || | | ||| || Sbjct 31000 TCAACTATGGCTTTCAACTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAA 30941 Query 182676 GGTCGTGTCCTTAACACTTGGGCAGATGTATTGAACCGTGCTGGTCTTGGTATGGAAGTT 182735 || ||||| ||||||||||||| || | | |||||||| |||||||||||||| Sbjct 30940 GGCCGTGTTATTAACACTTGGGCTGACATTATCAACCGTGCCAACCTTGGTATGGAAGTA 30881 Query 182736 ATGCATGAGCGTAACGCACACAACTTCCCACTAGATCTTGCTGCTGCTGA 182785 ||||||||||||||||| ||||||||||| ||||| | || | || ||| Sbjct 30880 ATGCATGAGCGTAACGCTCACAACTTCCCGTTAGATTTAGCGGTTGTTGA 30831 Score = 376 bits (416), Expect = 3e-99 Identities = 400/525 (76%), Gaps = 2/525 (0%) Strand=Plus/Minus Query 181794 TTCTGCGAGTGGGTTACATCTACCAACAATCGTCTCTATGTCGGTTGGTTTGGTGTGCTG 181853 || || ||||||||||| || | || ||| | || |||||||||||||||| | Sbjct 32746 TTTTGTGAGTGGGTTACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTATTA 32687 Query 181854 ATGATCCCAACTCTGTTGGCGGCAACCATCTGT-TTCATCGTTGCTTTCGTAGCAGCACC 181912 ||||| || ||| | || | ||||| || || || ||| | ||||| | |||||||| Sbjct 32686 ATGATTCCTACTTTATTAACTGCAACT-TCAGTGTTTATCATCGCTTTTATCGCAGCACC 32628 Query 181913 TCCTGTCGATATCGACGGTATCCGCGAACCCGTAGCTGGTTCACTCATGTATGGTAACAA 181972 |||||| |||||||| |||||||| || || || |||||||||| | || || ||||| Sbjct 32627 TCCTGTTGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCACTTTTATACGGAAACAA 32568 Query 181973 CATCATCTCTGGTGCTGTTGTCCCATCCTCCAACGCAATTGGTCTTCACTTCTACCCAAT 182032 |||||| ||||||||| || | || | || |||||||| ||| | || |||||||| || Sbjct 32567 CATCATTTCTGGTGCTATTATTCCTACTTCTAACGCAATCGGTTTACATTTCTACCCTAT 32508 Query 182033 CTGGGAAGCTGCCTCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTTGT 182092 |||||||| || || ||||| || ||| | || ||||||||||||| |||||| | || Sbjct 32507 TTGGGAAGCAGCTTCTCTTGACGAATGGTTATACAACGGTGGTCCTTACCAACTTATCGT 32448 Query 182093 TTTCCACTTCCTGATCGGCATCTACGCCTACATGGGACGTGAGTGGGAACTTTCTTACCG 182152 || || ||| | | || |||| | |||||||| |||||||||||| | |||| ||| Sbjct 32447 TTGTCATTTCTTCTTAGGAATCTGTTCTTACATGGGTCGTGAGTGGGAATTATCTTTCCG 32388 Query 182153 CTTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCTGCAGCATCTGC 182212 |||||||||||||| ||||| || || ||||| || ||||| ||||||||| | || Sbjct 32387 TTTAGGTATGCGTCCATGGATTGCAGTTGCTTACTCAGCACCAGTTGCTGCAGCAACAGC 32328 Query 182213 TGTATTCTTAGTCTATCCTTTCGGTCAAGGTTCGTTCTCCGATGCAATGCCCCTCGGAAT 182272 ||||||| | |||| || ||||||||||||| ||||| |||| ||||| | || || Sbjct 32327 TGTATTCATCATCTACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTAT 32268 Query 182273 CTCAGGAACATTCAACTATATGTTGGTTTTCCAAGCTGAGCACAA 182317 || || ||||| |||| ||| | || |||||||||||||| || Sbjct 32267 TTCTGGTACATTTAACTTCATGATCGTATTCCAAGCTGAGCATAA 32223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611668473680000