Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05]
3,600 sequences; 37,342,230 total letters
Query= NC_015289.1
Length=176184
Score E
Sequences producing significant alignments: (Bits) Value
seq2029 697 0.0
>seq2029
Length=64692
Score = 697 bits (772), Expect = 0.0
Identities = 771/1021 (76%), Gaps = 6/1021 (1%)
Strand=Plus/Minus
Query 166160 GTTCGATGTCCTTGACGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGTTGGTCTGG 166219
||| ||||| |||| ||||||||| || || |||||||||||||| || ||||| ||
Sbjct 63379 GTTTGATGTTGTTGATGACTGGCTTCGTCGCGACCGTTTCGTTTTTGTAGGATGGTCAGG 63320
Query 166220 ACTTCTTCTTCTTCCC-ACTGCTTATCTTGCTATTGGCGGTTGGCTCACTGGGACTACTT 166278
| ||| || ||||| ||||| |||||||| |||| |||||| | || || ||||| |
Sbjct 63319 GTTACTT-TTATTCCCGACTGCATATCTTGCACTTGGTGGTTGGTTTACAGGAACTACAT 63261
Query 166279 TCGTCACGAGTTGGTATACTCATGGACTCGCAAGCAGTTATCTGGAGGG-TGCAAACTTT 166337
| || || ||||||||||||||| | || | ||| | || || || || |||
Sbjct 63260 TTGTAACTTCTTGGTATACTCATGGTTTAGCTACTTCATATTTAGAAGGCTGTAA--TTT 63203
Query 166338 CTTA-CTGCGGCAGTTTCTACTCCAGCAGATGCTATGGGTCATTCTCTACTTCTTCTCTG 166396
|||| |||| || ||||||||||||||| || ||||||||||||| || | |||| ||
Sbjct 63202 CTTAACTGCTGCGGTTTCTACTCCAGCAAATAGTATGGGTCATTCTTTATTATTTCTTTG 63143
Query 166397 GGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGTGCCAACTTGGAGGGCTTTGGGCCTT 166456
||| || || |||||||| ||||| | ||||||||||||||||| |||||| | ||
Sbjct 63142 GGGCCCAGAAGCTCAAGGTGATTTTACTCGTTGGTGCCAACTTGGAGGTCTTTGGACTTT 63083
Query 166457 TGTTGCTCTCCACGGTGCTTTTGCCCTAATTGGTTTCATGCTTCGGCAGTTTGAAATCGC 166516
|| || || |||||| ||||| | || |||||||| |||||||| || |||||||| ||
Sbjct 63082 CGTAGCCCTTCACGGTTCTTTTTCACTGATTGGTTTTATGCTTCGTCAATTTGAAATTGC 63023
Query 166517 TCGTCTAGTAGGTATTCGTCCGTACAATGCAATCGCTTTTTCTGGTCCTATTGCTGTCTT 166576
|||| |||| |||||||| || || || || |||||||||| ||| ||| |||| ||
Sbjct 63022 TCGTTCAGTAAAAATTCGTCCATATAACGCGATTGCTTTTTCTGCTCCAATTTCTGTTTT 62963
Query 166577 CGTTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTT 166636
|||| ||| || || || ||||| | |||||||| ||||||| || || ||| |||
Sbjct 62962 CGTTTCTGTGTTCCTAATTTACCCATTAGGTCAATCAGGTTGGTTCTTTGCACCAAGTTT 62903
Query 166637 CGGGGTCTCAGCAATCTTCCGATTCCTCCTTTTCCTTCAAGGATTCCACAACTGGACACT 166696
|| || | ||||| ||||| || || | || ||||||| ||||| |||||||| |
Sbjct 62902 TGGTGTTGCGGCAATTTTCCGTTTTATCTTATTTTTTCAAGGCTTCCATAACTGGACTTT 62843
Query 166697 GAACCCATTTCATATGATGGGTGTAGCAGGTATTCTCGGTGGTGCATTGCTTTCTGCCAT 166756
||||| || ||||||||||||||||| ||| | || || | ||| || |||| |||||
Sbjct 62842 AAACCCTTTCCATATGATGGGTGTAGCTGGTGTACTAGGAGCTGCGTTACTTTGCGCCAT 62783
Query 166757 CCATGGTGTTACAGTAGAGAACACTCTGTATCAAGATGGTGAACAGGCAAATACTTTCAA 166816
||||||| ||| ||||| ||||| || | | |||||||||| ||||| || |||
Sbjct 62782 TCATGGTGCTACTGTAGAAAACACACTTTTTGAAGATGGTGATGGTGCAAACACATTCCG 62723
Query 166817 GGCATTCGACTCTACTCAAGAGGAAGAAACCTATTCAATGGTTACAGCAAACCGCTATTG 166876
|| || || | ||||||| |||||||| || || ||||| || || ||| | | |||
Sbjct 62722 TGCGTTTAACCCAACTCAAGCAGAAGAAACATACTCTATGGTAACTGCTAACAGATTTTG 62663
Query 166877 GTCTCAGATCTTCGGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTT 166936
|||||| ||||| ||| | || ||| |||||| | ||||| || ||||||||||| ||
Sbjct 62662 GTCTCAAATCTTTGGTGTAGCTTTTTCTAATAAACGTTGGTTACACTTCTTTATGCTTTT 62603
Query 166937 TGTTCCTGTTATGGGTCTGTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCT 166996
||||||||| | || || |||| ||| | || ||| | | ||||| ||| | ||| |
Sbjct 62602 TGTTCCTGTAACAGGGCTTTGGATGAGTGCTATTGGTGTAGTAGGTCTAGCTTTAAACTT 62543
Query 166997 TCGTGCTTATGACTTTGTTTCCCAAGAACTAAGGGCAGCAGAGGATCCTGAGTTTGAAAC 167056
|||||||| || || ||||| |||||| | | || ||||| ||||| || ||||||||
Sbjct 62542 ACGTGCTTACGATTTCGTTTCACAAGAAATTCGCGCTGCAGAAGATCCAGAATTTGAAAC 62483
Query 167057 CTTCTATACCAAGAACATTCTCTTGAATGAGGGTATGCGTTCTTGGATGGCAACTATCGA 167116
||||||||||| || || || || || || ||||| ||| |||||||||| || ||
Sbjct 62482 TTTCTATACCAAAAATATCCTTTTAAACGAAGGTATTCGTGCTTGGATGGCTGCTCAAGA 62423
Query 167117 TCAACCTCATGAGAGTTTCGTATTCCCTGAAGAGGTTCTTCCTAGAGGTAACGCTCTCTA 167176
||| |||||||| | | ||||||||||| |||||| | || | || |||||||| ||
Sbjct 62422 TCAGCCTCATGAAAAACTTGTATTCCCTGAGGAGGTTTTACCACGTGGAAACGCTCTTTA 62363
Query 167177 A 167177
|
Sbjct 62362 A 62362
Score = 342 bits (378), Expect = 6e-89
Identities = 351/454 (77%), Gaps = 10/454 (2%)
Strand=Plus/Minus
Query 165286 AACATTCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTCTT 165345
|||||||| ||||| || ||||| ||||| |||||||| || ||||| ||||| || |
Sbjct 31300 AACATTCTAATGCACCCATTCCATATGCTAGGCGTTGCCGGTGTATTTGGTGGTTCATTA 31241
Query 165346 TTCTCTGCTATGCATGGAAGTCTTGTTACTTCCTCACTCGTCCGCGAGACAACTGA-AAC 165404
|||||||||||||| || ||||| ||||| || || | || || |||||||| |||
Sbjct 31240 TTCTCTGCTATGCACGGTTCACTTGTAACTTCTTCTCTAATTCGTGAAACAACTGAGAAC 31181
Query 165405 AGAGAGTCAG--AACTACGGTTATAAGTTTGGACAAGAAGAAGAGACCTATAACATCGTC 165462
|| |||| ||| | ||||| || || || ||||||||||| || || ||||||||
Sbjct 31180 ---GAATCAGCTAACGAAGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTT 31124
Query 165463 GCTGCCCACGGGTACTTCGGTCGTCTCATTTTCCAATACGCATCCTTCAACAATTCCCGT 165522
|| || || || |||||||||||| | |||||||||||||| || || ||||| || |||
Sbjct 31123 GCAGCTCATGGCTACTTCGGTCGTTTAATTTTCCAATACGCTTCTTTTAACAACTCTCGT 31064
Query 165523 TCGCTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGT 165582
|| | || |||||| | || || ||||| || |||||||| ||||| |||||| | |||
Sbjct 31063 TCATTACATTTCTTCTTAGCTGCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGT 31004
Query 165583 GTTAGCACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCTATTGTTGATAGT 165642
|| || ||||| |||||| | || ||||||||||||||||| || |||| ||| |
Sbjct 31003 ATTTCAACTATGGCTTTCAACTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGAT--T 30946
Query 165643 CAGAA--CAAAATCATCCCTACTTGGGCTGACGTTCTGAACCGTGCTGGTCTGGGTATGG 165700
|| || | | || |||||||||||| || | |||||||| || |||||||
Sbjct 30945 CACAAGGCCGTGTTATTAACACTTGGGCTGACATTATCAACCGTGCCAACCTTGGTATGG 30886
Query 165701 AAGTTATGCATGAGCGTAACGCTCACAACTTCCC 165734
|||| |||||||||||||||||||||||||||||
Sbjct 30885 AAGTAATGCATGAGCGTAACGCTCACAACTTCCC 30852
Score = 342 bits (378), Expect = 6e-89
Identities = 393/526 (75%), Gaps = 2/526 (0%)
Strand=Plus/Minus
Query 164763 tttttGCGAGTGGGTGACTTCCACCAATAACCGTCTTTATGTCGGTTGGTTCGGTGTTCT 164822
|||||| |||||||| ||| ||| | |||||| | || |||||||||| ||||| |
Sbjct 32747 TTTTTGTGAGTGGGTTACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTATT 32688
Query 164823 TATGATCCCCTGTTTGCTCGCCGCTACAATTTGT-TTTATTACTGCATTCATCGCTGCTC 164881
||||| || ||| | | || || | || ||||| | || || ||||| || |
Sbjct 32687 AATGATTCCTACTTTATTAACTGCAACT-TCAGTGTTTATCATCGCTTTTATCGCAGCAC 32629
Query 164882 CCCCTGTGGACATTGATGGTATTCGTGAACCTGTCGCAGGTTCTCTAATGTACGGTAACA 164941
| ||||| || || |||||||| ||||| || || | ||||| || | ||||| ||||
Sbjct 32628 CTCCTGTTGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCACTTTTATACGGAAACA 32569
Query 164942 ACATCATCTCTGGTGCTGTCGTTCCGTCTTCTAACGCAATCGGACTTCACTTCTATCCTA 165001
||||||| ||||||||| | |||| |||||||||||||||| | || ||||| ||||
Sbjct 32568 ACATCATTTCTGGTGCTATTATTCCTACTTCTAACGCAATCGGTTTACATTTCTACCCTA 32509
Query 165002 TTTGGGAAGCTGCAACCATGGATGAATGGTTGTACAACGGTGGTCCTTACCAGTTGGTTG 165061
|||||||||| || | | || |||||||| |||||||||||||||||||| | | |
Sbjct 32508 TTTGGGAAGCAGCTTCTCTTGACGAATGGTTATACAACGGTGGTCCTTACCAACTTATCG 32449
Query 165062 TCTTCCACTTCCTCATCGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTGTCTTACC 165121
| | || ||| || | || | || ||||||||||||||||||||| | |||| ||
Sbjct 32448 TTTGTCATTTCTTCTTAGGAATCTGTTCTTACATGGGTCGTGAGTGGGAATTATCTTTCC 32389
Query 165122 GCCTCGGTATGCGTCCTTGGATTTGCGTAGCATATAGCGCACCTGTCGCTGCTGCTGCCG 165181
| | ||||||||||| |||||| || || || ||||| || ||||| || | |
Sbjct 32388 GTTTAGGTATGCGTCCATGGATTGCAGTTGCTTACTCAGCACCAGTTGCTGCAGCAACAG 32329
Query 165182 CAGTTTTCCTGGTCTATCCTTTCGGTCAAGGGAGTTTCTCTGATGGTATGCCTCTTGGTA 165241
| || ||| | |||| || |||||||||| ||||||||||||||||||| | ||||
Sbjct 32328 CTGTATTCATCATCTACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTA 32269
Query 165242 TCTCTGGTACTTTTAACTATATGTTCGTCTTCCAAGCAGAACATAA 165287
| |||||||| ||||||| ||| |||| |||||||| || |||||
Sbjct 32268 TTTCTGGTACATTTAACTTCATGATCGTATTCCAAGCTGAGCATAA 32223
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 563635435264000
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