Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq2029 697 0.0 >seq2029 Length=64692 Score = 697 bits (772), Expect = 0.0 Identities = 771/1021 (76%), Gaps = 6/1021 (1%) Strand=Plus/Minus Query 166160 GTTCGATGTCCTTGACGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGTTGGTCTGG 166219 ||| ||||| |||| ||||||||| || || |||||||||||||| || ||||| || Sbjct 63379 GTTTGATGTTGTTGATGACTGGCTTCGTCGCGACCGTTTCGTTTTTGTAGGATGGTCAGG 63320 Query 166220 ACTTCTTCTTCTTCCC-ACTGCTTATCTTGCTATTGGCGGTTGGCTCACTGGGACTACTT 166278 | ||| || ||||| ||||| |||||||| |||| |||||| | || || ||||| | Sbjct 63319 GTTACTT-TTATTCCCGACTGCATATCTTGCACTTGGTGGTTGGTTTACAGGAACTACAT 63261 Query 166279 TCGTCACGAGTTGGTATACTCATGGACTCGCAAGCAGTTATCTGGAGGG-TGCAAACTTT 166337 | || || ||||||||||||||| | || | ||| | || || || || ||| Sbjct 63260 TTGTAACTTCTTGGTATACTCATGGTTTAGCTACTTCATATTTAGAAGGCTGTAA--TTT 63203 Query 166338 CTTA-CTGCGGCAGTTTCTACTCCAGCAGATGCTATGGGTCATTCTCTACTTCTTCTCTG 166396 |||| |||| || ||||||||||||||| || ||||||||||||| || | |||| || Sbjct 63202 CTTAACTGCTGCGGTTTCTACTCCAGCAAATAGTATGGGTCATTCTTTATTATTTCTTTG 63143 Query 166397 GGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGTGCCAACTTGGAGGGCTTTGGGCCTT 166456 ||| || || |||||||| ||||| | ||||||||||||||||| |||||| | || Sbjct 63142 GGGCCCAGAAGCTCAAGGTGATTTTACTCGTTGGTGCCAACTTGGAGGTCTTTGGACTTT 63083 Query 166457 TGTTGCTCTCCACGGTGCTTTTGCCCTAATTGGTTTCATGCTTCGGCAGTTTGAAATCGC 166516 || || || |||||| ||||| | || |||||||| |||||||| || |||||||| || Sbjct 63082 CGTAGCCCTTCACGGTTCTTTTTCACTGATTGGTTTTATGCTTCGTCAATTTGAAATTGC 63023 Query 166517 TCGTCTAGTAGGTATTCGTCCGTACAATGCAATCGCTTTTTCTGGTCCTATTGCTGTCTT 166576 |||| |||| |||||||| || || || || |||||||||| ||| ||| |||| || Sbjct 63022 TCGTTCAGTAAAAATTCGTCCATATAACGCGATTGCTTTTTCTGCTCCAATTTCTGTTTT 62963 Query 166577 CGTTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTT 166636 |||| ||| || || || ||||| | |||||||| ||||||| || || ||| ||| Sbjct 62962 CGTTTCTGTGTTCCTAATTTACCCATTAGGTCAATCAGGTTGGTTCTTTGCACCAAGTTT 62903 Query 166637 CGGGGTCTCAGCAATCTTCCGATTCCTCCTTTTCCTTCAAGGATTCCACAACTGGACACT 166696 || || | ||||| ||||| || || | || ||||||| ||||| |||||||| | Sbjct 62902 TGGTGTTGCGGCAATTTTCCGTTTTATCTTATTTTTTCAAGGCTTCCATAACTGGACTTT 62843 Query 166697 GAACCCATTTCATATGATGGGTGTAGCAGGTATTCTCGGTGGTGCATTGCTTTCTGCCAT 166756 ||||| || ||||||||||||||||| ||| | || || | ||| || |||| ||||| Sbjct 62842 AAACCCTTTCCATATGATGGGTGTAGCTGGTGTACTAGGAGCTGCGTTACTTTGCGCCAT 62783 Query 166757 CCATGGTGTTACAGTAGAGAACACTCTGTATCAAGATGGTGAACAGGCAAATACTTTCAA 166816 ||||||| ||| ||||| ||||| || | | |||||||||| ||||| || ||| Sbjct 62782 TCATGGTGCTACTGTAGAAAACACACTTTTTGAAGATGGTGATGGTGCAAACACATTCCG 62723 Query 166817 GGCATTCGACTCTACTCAAGAGGAAGAAACCTATTCAATGGTTACAGCAAACCGCTATTG 166876 || || || | ||||||| |||||||| || || ||||| || || ||| | | ||| Sbjct 62722 TGCGTTTAACCCAACTCAAGCAGAAGAAACATACTCTATGGTAACTGCTAACAGATTTTG 62663 Query 166877 GTCTCAGATCTTCGGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTT 166936 |||||| ||||| ||| | || ||| |||||| | ||||| || ||||||||||| || Sbjct 62662 GTCTCAAATCTTTGGTGTAGCTTTTTCTAATAAACGTTGGTTACACTTCTTTATGCTTTT 62603 Query 166937 TGTTCCTGTTATGGGTCTGTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCT 166996 ||||||||| | || || |||| ||| | || ||| | | ||||| ||| | ||| | Sbjct 62602 TGTTCCTGTAACAGGGCTTTGGATGAGTGCTATTGGTGTAGTAGGTCTAGCTTTAAACTT 62543 Query 166997 TCGTGCTTATGACTTTGTTTCCCAAGAACTAAGGGCAGCAGAGGATCCTGAGTTTGAAAC 167056 |||||||| || || ||||| |||||| | | || ||||| ||||| || |||||||| Sbjct 62542 ACGTGCTTACGATTTCGTTTCACAAGAAATTCGCGCTGCAGAAGATCCAGAATTTGAAAC 62483 Query 167057 CTTCTATACCAAGAACATTCTCTTGAATGAGGGTATGCGTTCTTGGATGGCAACTATCGA 167116 ||||||||||| || || || || || || ||||| ||| |||||||||| || || Sbjct 62482 TTTCTATACCAAAAATATCCTTTTAAACGAAGGTATTCGTGCTTGGATGGCTGCTCAAGA 62423 Query 167117 TCAACCTCATGAGAGTTTCGTATTCCCTGAAGAGGTTCTTCCTAGAGGTAACGCTCTCTA 167176 ||| |||||||| | | ||||||||||| |||||| | || | || |||||||| || Sbjct 62422 TCAGCCTCATGAAAAACTTGTATTCCCTGAGGAGGTTTTACCACGTGGAAACGCTCTTTA 62363 Query 167177 A 167177 | Sbjct 62362 A 62362 Score = 342 bits (378), Expect = 6e-89 Identities = 351/454 (77%), Gaps = 10/454 (2%) Strand=Plus/Minus Query 165286 AACATTCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTCTT 165345 |||||||| ||||| || ||||| ||||| |||||||| || ||||| ||||| || | Sbjct 31300 AACATTCTAATGCACCCATTCCATATGCTAGGCGTTGCCGGTGTATTTGGTGGTTCATTA 31241 Query 165346 TTCTCTGCTATGCATGGAAGTCTTGTTACTTCCTCACTCGTCCGCGAGACAACTGA-AAC 165404 |||||||||||||| || ||||| ||||| || || | || || |||||||| ||| Sbjct 31240 TTCTCTGCTATGCACGGTTCACTTGTAACTTCTTCTCTAATTCGTGAAACAACTGAGAAC 31181 Query 165405 AGAGAGTCAG--AACTACGGTTATAAGTTTGGACAAGAAGAAGAGACCTATAACATCGTC 165462 || |||| ||| | ||||| || || || ||||||||||| || || |||||||| Sbjct 31180 ---GAATCAGCTAACGAAGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTT 31124 Query 165463 GCTGCCCACGGGTACTTCGGTCGTCTCATTTTCCAATACGCATCCTTCAACAATTCCCGT 165522 || || || || |||||||||||| | |||||||||||||| || || ||||| || ||| Sbjct 31123 GCAGCTCATGGCTACTTCGGTCGTTTAATTTTCCAATACGCTTCTTTTAACAACTCTCGT 31064 Query 165523 TCGCTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGT 165582 || | || |||||| | || || ||||| || |||||||| ||||| |||||| | ||| Sbjct 31063 TCATTACATTTCTTCTTAGCTGCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGT 31004 Query 165583 GTTAGCACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCTATTGTTGATAGT 165642 || || ||||| |||||| | || ||||||||||||||||| || |||| ||| | Sbjct 31003 ATTTCAACTATGGCTTTCAACTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGAT--T 30946 Query 165643 CAGAA--CAAAATCATCCCTACTTGGGCTGACGTTCTGAACCGTGCTGGTCTGGGTATGG 165700 || || | | || |||||||||||| || | |||||||| || ||||||| Sbjct 30945 CACAAGGCCGTGTTATTAACACTTGGGCTGACATTATCAACCGTGCCAACCTTGGTATGG 30886 Query 165701 AAGTTATGCATGAGCGTAACGCTCACAACTTCCC 165734 |||| ||||||||||||||||||||||||||||| Sbjct 30885 AAGTAATGCATGAGCGTAACGCTCACAACTTCCC 30852 Score = 342 bits (378), Expect = 6e-89 Identities = 393/526 (75%), Gaps = 2/526 (0%) Strand=Plus/Minus Query 164763 tttttGCGAGTGGGTGACTTCCACCAATAACCGTCTTTATGTCGGTTGGTTCGGTGTTCT 164822 |||||| |||||||| ||| ||| | |||||| | || |||||||||| ||||| | Sbjct 32747 TTTTTGTGAGTGGGTTACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTATT 32688 Query 164823 TATGATCCCCTGTTTGCTCGCCGCTACAATTTGT-TTTATTACTGCATTCATCGCTGCTC 164881 ||||| || ||| | | || || | || ||||| | || || ||||| || | Sbjct 32687 AATGATTCCTACTTTATTAACTGCAACT-TCAGTGTTTATCATCGCTTTTATCGCAGCAC 32629 Query 164882 CCCCTGTGGACATTGATGGTATTCGTGAACCTGTCGCAGGTTCTCTAATGTACGGTAACA 164941 | ||||| || || |||||||| ||||| || || | ||||| || | ||||| |||| Sbjct 32628 CTCCTGTTGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCACTTTTATACGGAAACA 32569 Query 164942 ACATCATCTCTGGTGCTGTCGTTCCGTCTTCTAACGCAATCGGACTTCACTTCTATCCTA 165001 ||||||| ||||||||| | |||| |||||||||||||||| | || ||||| |||| Sbjct 32568 ACATCATTTCTGGTGCTATTATTCCTACTTCTAACGCAATCGGTTTACATTTCTACCCTA 32509 Query 165002 TTTGGGAAGCTGCAACCATGGATGAATGGTTGTACAACGGTGGTCCTTACCAGTTGGTTG 165061 |||||||||| || | | || |||||||| |||||||||||||||||||| | | | Sbjct 32508 TTTGGGAAGCAGCTTCTCTTGACGAATGGTTATACAACGGTGGTCCTTACCAACTTATCG 32449 Query 165062 TCTTCCACTTCCTCATCGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTGTCTTACC 165121 | | || ||| || | || | || ||||||||||||||||||||| | |||| || Sbjct 32448 TTTGTCATTTCTTCTTAGGAATCTGTTCTTACATGGGTCGTGAGTGGGAATTATCTTTCC 32389 Query 165122 GCCTCGGTATGCGTCCTTGGATTTGCGTAGCATATAGCGCACCTGTCGCTGCTGCTGCCG 165181 | | ||||||||||| |||||| || || || ||||| || ||||| || | | Sbjct 32388 GTTTAGGTATGCGTCCATGGATTGCAGTTGCTTACTCAGCACCAGTTGCTGCAGCAACAG 32329 Query 165182 CAGTTTTCCTGGTCTATCCTTTCGGTCAAGGGAGTTTCTCTGATGGTATGCCTCTTGGTA 165241 | || ||| | |||| || |||||||||| ||||||||||||||||||| | |||| Sbjct 32328 CTGTATTCATCATCTACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTA 32269 Query 165242 TCTCTGGTACTTTTAACTATATGTTCGTCTTCCAAGCAGAACATAA 165287 | |||||||| ||||||| ||| |||| |||||||| || ||||| Sbjct 32268 TTTCTGGTACATTTAACTTCATGATCGTATTCCAAGCTGAGCATAA 32223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563635435264000