Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq2029 376 3e-99 >seq2029 Length=64692 Score = 376 bits (416), Expect = 3e-99 Identities = 403/533 (76%), Gaps = 0/533 (0%) Strand=Plus/Minus Query 169681 TGGCCTCAGTTTACTGATTGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTC 169740 ||| ||| ||| ||| ||||| || ||||| | ||||| | || | |||||||| Sbjct 32755 TGGGCTCGTTTTTGTGAGTGGGTTACTAGCACTGAAAACCGTTTATACATCGGTTGGTTT 32696 Query 169741 GGTGTCTTGATGATCCCATGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATC 169800 ||||| || ||||| || | ||||| | ||| | | |||||| | ||||| ||| Sbjct 32695 GGTGTATTAATGATTCCTACTTTATTAACTGCAACTTCAGTGTTTATCATCGCTTTTATC 32636 Query 169801 GCAGCTCCACCTGTGGACATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTAT 169860 ||||| || ||||| || |||||||| ||| | || || || | |||||| | | || Sbjct 32635 GCAGCACCTCCTGTTGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCACTTTTATAC 32576 Query 169861 GGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTC 169920 || ||||||||||| |||||||| || |||| |||| |||||||||||| | || ||| Sbjct 32575 GGAAACAACATCATTTCTGGTGCTATTATTCCTACTTCTAACGCAATCGGTTTACATTTC 32516 Query 169921 TATCCTATTTGGGAAGCAGCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAA 169980 || ||||||||||||||||| |||| || || ||||| || |||||||||||||| ||| Sbjct 32515 TACCCTATTTGGGAAGCAGCTTCTCTTGACGAATGGTTATACAACGGTGGTCCTTACCAA 32456 Query 169981 TTAGTTATCTTCCACTTCCTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTA 170040 | | | | || ||| | | ||||||| | | ||||||||| | |||||||| || Sbjct 32455 CTTATCGTTTGTCATTTCTTCTTAGGAATCTGTTCTTACATGGGTCGTGAGTGGGAATTA 32396 Query 170041 TCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCA 170100 || | |||||||||||||||||| ||||| || || || || || ||||| | ||| Sbjct 32395 TCTTTCCGTTTAGGTATGCGTCCATGGATTGCAGTTGCTTACTCAGCACCAGTTGCTGCA 32336 Query 170101 GCATTCGCTGTATTCTTAGTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCT 170160 ||| ||||||||| | | || || ||||||| || |||||||| || || |||||| Sbjct 32335 GCAACAGCTGTATTCATCATCTACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCT 32276 Query 170161 CTAGGTATCTCAGGTACATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAA 170213 ||||||| || |||||||||||||||||| ||||||||||||| ||||| || Sbjct 32275 TTAGGTATTTCTGGTACATTTAACTTCATGATCGTATTCCAAGCTGAGCATAA 32223 Score = 327 bits (362), Expect = 1e-84 Identities = 342/449 (76%), Gaps = 0/449 (0%) Strand=Plus/Minus Query 170212 AACATTCTTATGCACCCATTCCATATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTC 170271 |||||||| |||||||||||||||||| ||| ||||| ||| | || || || || | Sbjct 31300 AACATTCTAATGCACCCATTCCATATGCTAGGCGTTGCCGGTGTATTTGGTGGTTCATTA 31241 Query 170272 TTCTCAGCAATGCACGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACAACAGATAAC 170331 ||||| || |||||||||||||||||||| ||||||||||| | || ||||| || ||| Sbjct 31240 TTCTCTGCTATGCACGGTTCACTTGTAACTTCTTCTCTAATTCGTGAAACAACTGAGAAC 31181 Query 170332 GAGTCACAGAACTATGGATACAAATTCGGACAAGAAGAAGAAACATACAACATTGTTGCA 170391 || ||| ||| | || ||||||||||| |||||||||||||| |||||||| |||||| Sbjct 31180 GAATCAGCTAACGAAGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCA 31121 Query 170392 GCACATGGATACTTTGGTAGACTTATCTTCCAATATGCTAGCTTTAACAATAGTCGTAGT 170451 || ||||| ||||| ||| | | || |||||||| ||| |||||||| |||| Sbjct 31120 GCTCATGGCTACTTCGGTCGTTTAATTTTCCAATACGCTTCTTTTAACAACTCTCGTTCA 31061 Query 170452 CTTCACTTCTTCCTTGCTACATTCCCTGTAGTATGCATCTGGTTAACTTCAATGGGTATT 170511 | || |||||| | ||| | | || || || | || ||||| ||| | | |||||| Sbjct 31060 TTACATTTCTTCTTAGCTGCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGTATT 31001 Query 170512 TGCACAATGGCATTTAACCTTAATGGATTTAACTTCAACCAGTCAATCGTAGATGGATCT 170571 | || ||||| || ||| | ||||| || ||||||||||| ||| | |||||| | Sbjct 31000 TCAACTATGGCTTTCAACTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAA 30941 Query 170572 GGTAAAGTAGTTCCTACATGGGCAGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTA 170631 || || || || ||||| ||| || | ||| | || ||||| |||||||||||| Sbjct 30940 GGCCGTGTTATTAACACTTGGGCTGACATTATCAACCGTGCCAACCTTGGTATGGAAGTA 30881 Query 170632 ATGCATGAGCGTAATGCACACAACTTCCC 170660 |||||||||||||| || ||||||||||| Sbjct 30880 ATGCATGAGCGTAACGCTCACAACTTCCC 30852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582821771840000