Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq2029 376 3e-99 >seq2029 Length=64692 Score = 376 bits (416), Expect = 3e-99 Identities = 400/525 (76%), Gaps = 2/525 (0%) Strand=Plus/Plus Query 84432 TTATGTTCCGCCTGGAAGACAAGCATGTAGTTGAACGTTCCTGAGATACCAAGTGGCATG 84491 ||||| || || ||||| || | |||| |||| || || || || ||||| | ||||| Sbjct 32223 TTATGCTCAGCTTGGAATACGATCATGAAGTTAAATGTACCAGAAATACCTAAAGGCATA 32282 Query 84492 CCATCAGAGAAAGAACCTTGCCCGAAAGGATACACAAGGAATACAGCAGATGCCGCTGCA 84551 |||||||||||||||||||| |||| || || | | ||||||||| | ||| || ||| Sbjct 32283 CCATCAGAGAAAGAACCTTGACCGATTGGGTAGATGATGAATACAGCTGTTGCTGCAGCA 32342 Query 84552 ACTGGAGCAGAGTAAGCAACACAGATCCATGGACGCATACCGAGACGATATGAAAGTTCC 84611 ||||| || ||||||||||| ||||||||||||||||| | ||| | || | |||| Sbjct 32343 ACTGGTGCTGAGTAAGCAACTGCAATCCATGGACGCATACCTAAACGGAAAGATAATTCC 32402 Query 84612 CATTCACGACCCATGTAAGCAAATGCACCAATCAGGAAGTGAAAGACAACAAGTTGATAA 84671 || |||||||||||||||| | | || | | ||| ||| | || | |||||| ||| Sbjct 32403 CACTCACGACCCATGTAAGAACAGATTCCTAAGAAGAAATGACAAACGATAAGTTGGTAA 32462 Query 84672 GGTCCACCATTATATAGCCATTCGTCCATACTTGCTGCTTCCCAAATAGGATAGAAATGT 84731 || ||||| || |||| ||||||||| | | ||||||||||||||||| ||||||||| Sbjct 32463 GGACCACCGTTGTATAACCATTCGTCAAGAGAAGCTGCTTCCCAAATAGGGTAGAAATGT 32522 Query 84732 AGACCAATAGCATTAGAGGATGGAACTACGGCACCAGAAATGATGTTGTTTCCGTACATG 84791 | ||| || || ||||| | |||| | |||||||||||||||||||||||||| | Sbjct 32523 AAACCGATTGCGTTAGAAGTAGGAATAATAGCACCAGAAATGATGTTGTTTCCGTATAAA 32582 Query 84792 AGAGAACCAGCGACTGGCTCACGGATACCGTCAATATCAACTGGGGGTGCACCAACGAAT 84851 || ||||||| ||||||||||||||||| || |||||||| || ||||| | | || Sbjct 32583 AGTGAACCAGAAACTGGCTCACGGATACCATCGATATCAACAGGAGGTGCTGCGATAAAA 32642 Query 84852 GCAATGATGAA-ACAGACAGTGGCAGCAAGTAGAGTTGGAATCATAAGAGTTCCAAACCA 84910 || ||||| || || || ||| |||| | || ||| |||||||| | |||||||| Sbjct 32643 GCGATGATAAACACTGA-AGTTGCAGTTAATAAAGTAGGAATCATTAATACACCAAACCA 32701 Query 84911 ACCAACATAGATACGGTTGTTAGTGGAGGTGACCCAATCACAGAA 84955 ||| | || | |||||| | |||| || ||||| ||||| || Sbjct 32702 ACCGATGTATAAACGGTTTTCAGTGCTAGTAACCCACTCACAAAA 32746 Score = 360 bits (398), Expect = 2e-94 Identities = 357/462 (77%), Gaps = 0/462 (0%) Strand=Plus/Plus Query 83972 CGCAAGATCCAACGGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCC 84031 ||| | ||| ||||||||||| || |||||||| || ||||| |||||||||||||| Sbjct 30839 CGCTAAATCTAACGGGAAGTTGTGAGCGTTACGCTCATGCATTACTTCCATACCAAGGTT 30898 Query 84032 GGCACGATTAAGTACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACT 84091 |||||| || | | || ||||| || || | ||||||| ||| ||| |||| Sbjct 30899 GGCACGGTTGATAATGTCAGCCCAAGTGTTAATAACACGGCCTTGTGAATCTACAACTGA 30958 Query 84092 CTGATTGAAGTTAAATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAA 84151 || |||||||| || ||||| | || || ||||| || || ||| | ||||| ||| Sbjct 30959 TTGGTTGAAGTTGAAACCATTTAAGTTGAAAGCCATAGTTGAAATACCTAAAGCAGTAAA 31018 Query 84152 CCAAATGCCAACCACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAA 84211 |||||| ||||| |||||||||||||| ||||| || || | |||||| ||||| || Sbjct 31019 CCAAATACCAACAACTGGCCAAGCAGCTAAGAAGAAATGTAATGAACGAGAGTTGTTAAA 31078 Query 84212 GGAAGCATACTGGAAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGT 84271 ||||| || ||||| || | ||||||||||||||| ||||| ||||| || || ||||| Sbjct 31079 AGAAGCGTATTGGAAAATTAAACGACCGAAGTAGCCATGAGCTGCAACGATGTTGTAAGT 31138 Query 84272 TTCCTCTTCTTGACCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCG 84331 ||| |||||||||||||| |||||||| | ||| ||| | || || || ||||| || Sbjct 31139 TTCTTCTTCTTGACCGAATTTGTAACCTTCGTTAGCTGATTCGTTCTCAGTTGTTTCACG 31198 Query 84332 GATTAGAGAAGAAGTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATAC 84391 |||||||||||||| ||||||||||| ||||| |||||||||| | ||||| ||||| Sbjct 31199 AATTAGAGAAGAAGTTACAAGTGAACCGTGCATAGCAGAGAATAATGAACCACCAAATAC 31258 Query 84392 ACCAGCAACTCCCAACATGTGAAAGGGATGCATAAGGATGTT 84433 ||| ||||| || | ||| || || || ||||| || ||||| Sbjct 31259 ACCGGCAACGCCTAGCATATGGAATGGGTGCATTAGAATGTT 31300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571247892688000