Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05]
3,600 sequences; 37,342,230 total letters
Query= NC_016656.1
Length=45890
Score E
Sequences producing significant alignments: (Bits) Value
seq2029 279 2e-70
>seq2029
Length=64692
Score = 279 bits (308), Expect = 2e-70
Identities = 376/524 (72%), Gaps = 0/524 (0%)
Strand=Plus/Minus
Query 25802 TTTTGTGAGTGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTT 25861
||||||||||||||||| || ||||| |||||| | || | || ||||| || || |
Sbjct 32746 TTTTGTGAGTGGGTTACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTATTA 32687
Query 25862 ATGATACCCTGCTTACTCGCAGCCACTACATGTTTTATACTTGCCTTCATCGCAGCACCG 25921
||||| || ||| | | || ||| || ||||| | || || |||||||||||
Sbjct 32686 ATGATTCCTACTTTATTAACTGCAACTTCAGTGTTTATCATCGCTTTTATCGCAGCACCT 32627
Query 25922 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 25981
||||| ||||| ||||| || |||||||||||||| || || | | |||||||||||
Sbjct 32626 CCTGTTGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCACTTTTATACGGAAACAAC 32567
Query 25982 ATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGATC 26041
|| || || || || | | || | |||||||||||||| ||||||| ||||| ||
Sbjct 32566 ATCATTTCTGGTGCTATTATTCCTACTTCTAACGCAATCGGTTTACATTTCTACCCTATT 32507
Query 26042 TGGGAAGCTGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTATC 26101
|||||||| | | || ||||| ||| ||||||| || || || || ||||| || |
Sbjct 32506 TGGGAAGCAGCTTCTCTTGACGAATGGTTATACAACGGTGGTCCTTACCAACTTATCGTT 32447
Query 26102 TTCCACTTCTTAATAGGAGTAGCAGCATATGCAGGGAGACAGTGGGAACTATCTTACAGA 26161
| || ||||| ||||| | | || || | |||||||| |||||| | |
Sbjct 32446 TGTCATTTCTTCTTAGGAATCTGTTCTTACATGGGTCGTGAGTGGGAATTATCTTTCCGT 32387
Query 26162 CTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTCGCA 26221
|||| ||| | |||||||| ||||| || |||||||| | | ||||| ||
Sbjct 32386 TTAGGTATGCGTCCATGGATTGCAGTTGCTTACTCAGCACCAGTTGCTGCAGCAACAGCT 32327
Query 26222 GTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATC 26281
|| ||| | | || || |||| ||||| ||| |||||| |||||| | |||||
Sbjct 32326 GTATTCATCATCTACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTATT 32267
Query 26282 TCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAA 26325
|||||||| |||||||| ||| ||||||||||||| || |||||
Sbjct 32266 TCTGGTACATTTAACTTCATGATCGTATTCCAAGCTGAGCATAA 32223
Score = 226 bits (250), Expect = 8e-55
Identities = 329/462 (71%), Gaps = 2/462 (0%)
Strand=Plus/Minus
Query 26324 AATATACTCATGCACCCATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTT 26383
|| || || |||||||||||||||||| || ||||| || || || ||||| | |
Sbjct 31300 AACATTCTAATGCACCCATTCCATATGCTAGGCGTTGCCGGTGTATTTGGTGGTTCATTA 31241
Query 26384 TTCGCTGCTATGCACGGAAGTTTGGTTACTTCCTCACTTATTGCAGAAACGACAGAGGAA 26443
||| ||||||||||||| | || ||||| || || ||| ||||| || ||| |
Sbjct 31240 TTCTCTGCTATGCACGGTTCACTTGTAACTTCTTCTCTAATTCGTGAAACAACTGAGAAC 31181
Query 26444 GTCTCACAGAATTATGGCTATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCT 26503
| ||| || | || || || || || ||||| ||||| || || || || || ||
Sbjct 31180 GAATCAGCTAACGAAGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCA 31121
Query 26504 GCACACGGGTACTTTGGGAGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCT 26563
|| || || ||||| || | |||||||| || || || |||||| ||| |||||
Sbjct 31120 GCTCATGGCTACTTCGGTCGTTTAATTTTCCAATACGCTTCTTTTAACAACTCTCGTTCA 31061
Query 26564 CTTCATTTCTTTCTTGCTACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATC 26623
| |||||||| | ||| ||||||| |||||||| || ||| | || || | |||||
Sbjct 31060 TTACATTTCTTCTTAGCTGCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGTATT 31001
Query 26624 TGCACAATGGCATTTAACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGA-TGTTAA 26682
| || ||||| || ||| |||||||||| ||||| ||||| ||||| ||||| | ||
Sbjct 31000 TCAACTATGGCTTTCAACTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAA 30941
Query 26683 TGGAAAGATAATACCTACATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGT 26742
| | || || | || |||||||| | | ||||| || ||||| || | |||||
Sbjct 30940 GGCCGTGTTATTAAC-ACTTGGGCTGACATTATCAACCGTGCCAACCTTGGTATGGAAGT 30882
Query 26743 TATGCACGAGCGTAATGCTCATAACTTTCCACTTGACTTAGC 26784
||||| |||||||| ||||| ||||| || | || |||||
Sbjct 30881 AATGCATGAGCGTAACGCTCACAACTTCCCGTTAGATTTAGC 30840
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 146720127446400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |