Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq2029 279 2e-70 >seq2029 Length=64692 Score = 279 bits (308), Expect = 2e-70 Identities = 376/524 (72%), Gaps = 0/524 (0%) Strand=Plus/Minus Query 25802 TTTTGTGAGTGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTT 25861 ||||||||||||||||| || ||||| |||||| | || | || ||||| || || | Sbjct 32746 TTTTGTGAGTGGGTTACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTATTA 32687 Query 25862 ATGATACCCTGCTTACTCGCAGCCACTACATGTTTTATACTTGCCTTCATCGCAGCACCG 25921 ||||| || ||| | | || ||| || ||||| | || || ||||||||||| Sbjct 32686 ATGATTCCTACTTTATTAACTGCAACTTCAGTGTTTATCATCGCTTTTATCGCAGCACCT 32627 Query 25922 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 25981 ||||| ||||| ||||| || |||||||||||||| || || | | ||||||||||| Sbjct 32626 CCTGTTGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCACTTTTATACGGAAACAAC 32567 Query 25982 ATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGATC 26041 || || || || || | | || | |||||||||||||| ||||||| ||||| || Sbjct 32566 ATCATTTCTGGTGCTATTATTCCTACTTCTAACGCAATCGGTTTACATTTCTACCCTATT 32507 Query 26042 TGGGAAGCTGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTATC 26101 |||||||| | | || ||||| ||| ||||||| || || || || ||||| || | Sbjct 32506 TGGGAAGCAGCTTCTCTTGACGAATGGTTATACAACGGTGGTCCTTACCAACTTATCGTT 32447 Query 26102 TTCCACTTCTTAATAGGAGTAGCAGCATATGCAGGGAGACAGTGGGAACTATCTTACAGA 26161 | || ||||| ||||| | | || || | |||||||| |||||| | | Sbjct 32446 TGTCATTTCTTCTTAGGAATCTGTTCTTACATGGGTCGTGAGTGGGAATTATCTTTCCGT 32387 Query 26162 CTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTCGCA 26221 |||| ||| | |||||||| ||||| || |||||||| | | ||||| || Sbjct 32386 TTAGGTATGCGTCCATGGATTGCAGTTGCTTACTCAGCACCAGTTGCTGCAGCAACAGCT 32327 Query 26222 GTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATC 26281 || ||| | | || || |||| ||||| ||| |||||| |||||| | ||||| Sbjct 32326 GTATTCATCATCTACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTATT 32267 Query 26282 TCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAA 26325 |||||||| |||||||| ||| ||||||||||||| || ||||| Sbjct 32266 TCTGGTACATTTAACTTCATGATCGTATTCCAAGCTGAGCATAA 32223 Score = 226 bits (250), Expect = 8e-55 Identities = 329/462 (71%), Gaps = 2/462 (0%) Strand=Plus/Minus Query 26324 AATATACTCATGCACCCATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTT 26383 || || || |||||||||||||||||| || ||||| || || || ||||| | | Sbjct 31300 AACATTCTAATGCACCCATTCCATATGCTAGGCGTTGCCGGTGTATTTGGTGGTTCATTA 31241 Query 26384 TTCGCTGCTATGCACGGAAGTTTGGTTACTTCCTCACTTATTGCAGAAACGACAGAGGAA 26443 ||| ||||||||||||| | || ||||| || || ||| ||||| || ||| | Sbjct 31240 TTCTCTGCTATGCACGGTTCACTTGTAACTTCTTCTCTAATTCGTGAAACAACTGAGAAC 31181 Query 26444 GTCTCACAGAATTATGGCTATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCT 26503 | ||| || | || || || || || ||||| ||||| || || || || || || Sbjct 31180 GAATCAGCTAACGAAGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCA 31121 Query 26504 GCACACGGGTACTTTGGGAGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCT 26563 || || || ||||| || | |||||||| || || || |||||| ||| ||||| Sbjct 31120 GCTCATGGCTACTTCGGTCGTTTAATTTTCCAATACGCTTCTTTTAACAACTCTCGTTCA 31061 Query 26564 CTTCATTTCTTTCTTGCTACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATC 26623 | |||||||| | ||| ||||||| |||||||| || ||| | || || | ||||| Sbjct 31060 TTACATTTCTTCTTAGCTGCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGTATT 31001 Query 26624 TGCACAATGGCATTTAACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGA-TGTTAA 26682 | || ||||| || ||| |||||||||| ||||| ||||| ||||| ||||| | || Sbjct 31000 TCAACTATGGCTTTCAACTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAA 30941 Query 26683 TGGAAAGATAATACCTACATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGT 26742 | | || || | || |||||||| | | ||||| || ||||| || | ||||| Sbjct 30940 GGCCGTGTTATTAAC-ACTTGGGCTGACATTATCAACCGTGCCAACCTTGGTATGGAAGT 30882 Query 26743 TATGCACGAGCGTAATGCTCATAACTTTCCACTTGACTTAGC 26784 ||||| |||||||| ||||| ||||| || | || ||||| Sbjct 30881 AATGCATGAGCGTAACGCTCACAACTTCCCGTTAGATTTAGC 30840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146720127446400