Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05]
3,600 sequences; 37,342,230 total letters
Query= NC_016658.1
Length=47741
Score E
Sequences producing significant alignments: (Bits) Value
seq2029 309 9e-80
>seq2029
Length=64692
Score = 309 bits (342), Expect = 9e-80
Identities = 353/472 (75%), Gaps = 4/472 (1%)
Strand=Plus/Plus
Query 5186 TCAGCAGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATA 5245
||| || | |||| ||| | |||||||||||||| || || || |||||||||||||||
Sbjct 30831 TCAACAACCGCTAAATCTAACGGGAAGTTGTGAGCGTTACGCTCATGCATTACTTCCATA 30890
Query 5246 CCAAGGTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCA 5305
||||||||||||||||| | | || ||||||||| || | | || || ||
Sbjct 30891 CCAAGGTTGGCACGGTTGATAATGTCAGCCCAAGTGTTAATAACACGGCCTTGTGAATCT 30950
Query 5306 ACGACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATA 5365
|| ||||| || |||||||| || || || | || ||||||||||| || || || | |
Sbjct 30951 ACAACTGATTGGTTGAAGTTGAAACCATTTAAGTTGAAAGCCATAGTTGAAATACCTAAA 31010
Query 5366 GAGGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTA 5425
| |||| ||| || | ||| || ||||||| ||| | |||||||||||| |||
Sbjct 31011 GCAGTAAACCAAATACCAACAACTGGCCAAGCAGCTAAGAAGAAATGTAATGAACGAGAG 31070
Query 5426 TTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATG 5485
|||||||| ||| || ||||| || | | || |||||||||||||| ||||| |||
Sbjct 31071 TTGTTAAAAGAAGCGTATTGGAAAATTAAACGACCGAAGTAGCCATGAGCTGCAACGATG 31130
Query 5486 TTATACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTT--CTGAGAAGTAAGCCCAG 5543
|| || |||||||| ||||| |||||||| || || | ||| |||| || | |||
Sbjct 31131 TTGTAAGTTTCTTCTTCTTGACCGAATTTGTAACCTTCGTTAGCTGATTCGT--TCTCAG 31188
Query 5544 TTGTTTCACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTC 5603
||||||||||||| || |||||||| ||||| || |||||||||| ||| || | |
Sbjct 31189 TTGTTTCACGAATTAGAGAAGAAGTTACAAGTGAACCGTGCATAGCAGAGAATAATGAAC 31248
Query 5604 CACCGAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATT 5655
|||| ||||| || ||||| || ||||| ||||| || ||||| || || ||
Sbjct 31249 CACCAAATACACCGGCAACGCCTAGCATATGGAATGGGTGCATTAGAATGTT 31300
Score = 291 bits (322), Expect = 2e-74
Identities = 379/524 (72%), Gaps = 0/524 (0%)
Strand=Plus/Plus
Query 5654 TTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATA 5713
|| || || || |||||||||| ||| |||||||| |||||||| ||||| | |||||||
Sbjct 32223 TTATGCTCAGCTTGGAATACGATCATGAAGTTAAATGTACCAGAAATACCTAAAGGCATA 32282
Query 5714 CCATCACTGAAACTTCCCTGTCCGAAAGGGTATACTAAAAATACTGAGTAGGCTGCGGCA 5773
|||||| |||| || || |||| ||||| | | ||||| | ||||| |||
Sbjct 32283 CCATCAGAGAAAGAACCTTGACCGATTGGGTAGATGATGAATACAGCTGTTGCTGCAGCA 32342
Query 5774 ACCGGTGCTGAATATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCC 5833
|| |||||||| || || || ||||||||| ||||| ||||| | | || | ||||
Sbjct 32343 ACTGGTGCTGAGTAAGCAACTGCAATCCATGGACGCATACCTAAACGGAAAGATAATTCC 32402
Query 5834 CATTGGCGTCCCAAGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTAT 5893
|| | || |||| ||||| ||| || | | ||| || | |||| ||||||||
Sbjct 32403 CACTCACGACCCATGTAAGAACAGATTCCTAAGAAGAAATGACAAACGATAAGTTGGTAA 32462
Query 5894 GGTCCTCCATTGTAAAGCCATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAGTGT 5953
|| || || ||||| | |||||| || ||| ||||||||||| || || ||||| |||
Sbjct 32463 GGACCACCGTTGTATAACCATTCGTCAAGAGAAGCTGCTTCCCAAATAGGGTAGAAATGT 32522
Query 5954 AACCCAATTGCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGT 6013
|| || |||||||| || | || | || || || || |||||||||||||| || |
Sbjct 32523 AAACCGATTGCGTTAGAAGTAGGAATAATAGCACCAGAAATGATGTTGTTTCCGTATAAA 32582
Query 6014 AGAGATCCTGCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAAT 6073
|| || || | || || ||||| || || ||||| || || || ||||| || | ||
Sbjct 32583 AGTGAACCAGAAACTGGCTCACGGATACCATCGATATCAACAGGAGGTGCTGCGATAAAA 32642
Query 6074 GCTAATATAAATGCAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCAC 6133
|| | ||||| | | |||||| ||||| | | || |||||||| |||||||||||
Sbjct 32643 GCGATGATAAACACTGAAGTTGCAGTTAATAAAGTAGGAATCATTAATACACCAAACCAA 32702
Query 6134 CCCACATAGAGGCGGTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177
|| | || | ||||| | |||||||||||||| ||||| ||
Sbjct 32703 CCGATGTATAAACGGTTTTCAGTGCTAGTAACCCACTCACAAAA 32746
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 152643074229600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |