Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq2029 309 9e-80 >seq2029 Length=64692 Score = 309 bits (342), Expect = 9e-80 Identities = 353/472 (75%), Gaps = 4/472 (1%) Strand=Plus/Plus Query 5186 TCAGCAGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATA 5245 ||| || | |||| ||| | |||||||||||||| || || || ||||||||||||||| Sbjct 30831 TCAACAACCGCTAAATCTAACGGGAAGTTGTGAGCGTTACGCTCATGCATTACTTCCATA 30890 Query 5246 CCAAGGTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCA 5305 ||||||||||||||||| | | || ||||||||| || | | || || || Sbjct 30891 CCAAGGTTGGCACGGTTGATAATGTCAGCCCAAGTGTTAATAACACGGCCTTGTGAATCT 30950 Query 5306 ACGACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATA 5365 || ||||| || |||||||| || || || | || ||||||||||| || || || | | Sbjct 30951 ACAACTGATTGGTTGAAGTTGAAACCATTTAAGTTGAAAGCCATAGTTGAAATACCTAAA 31010 Query 5366 GAGGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTA 5425 | |||| ||| || | ||| || ||||||| ||| | |||||||||||| ||| Sbjct 31011 GCAGTAAACCAAATACCAACAACTGGCCAAGCAGCTAAGAAGAAATGTAATGAACGAGAG 31070 Query 5426 TTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATG 5485 |||||||| ||| || ||||| || | | || |||||||||||||| ||||| ||| Sbjct 31071 TTGTTAAAAGAAGCGTATTGGAAAATTAAACGACCGAAGTAGCCATGAGCTGCAACGATG 31130 Query 5486 TTATACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTT--CTGAGAAGTAAGCCCAG 5543 || || |||||||| ||||| |||||||| || || | ||| |||| || | ||| Sbjct 31131 TTGTAAGTTTCTTCTTCTTGACCGAATTTGTAACCTTCGTTAGCTGATTCGT--TCTCAG 31188 Query 5544 TTGTTTCACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTC 5603 ||||||||||||| || |||||||| ||||| || |||||||||| ||| || | | Sbjct 31189 TTGTTTCACGAATTAGAGAAGAAGTTACAAGTGAACCGTGCATAGCAGAGAATAATGAAC 31248 Query 5604 CACCGAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATT 5655 |||| ||||| || ||||| || ||||| ||||| || ||||| || || || Sbjct 31249 CACCAAATACACCGGCAACGCCTAGCATATGGAATGGGTGCATTAGAATGTT 31300 Score = 291 bits (322), Expect = 2e-74 Identities = 379/524 (72%), Gaps = 0/524 (0%) Strand=Plus/Plus Query 5654 TTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATA 5713 || || || || |||||||||| ||| |||||||| |||||||| ||||| | ||||||| Sbjct 32223 TTATGCTCAGCTTGGAATACGATCATGAAGTTAAATGTACCAGAAATACCTAAAGGCATA 32282 Query 5714 CCATCACTGAAACTTCCCTGTCCGAAAGGGTATACTAAAAATACTGAGTAGGCTGCGGCA 5773 |||||| |||| || || |||| ||||| | | ||||| | ||||| ||| Sbjct 32283 CCATCAGAGAAAGAACCTTGACCGATTGGGTAGATGATGAATACAGCTGTTGCTGCAGCA 32342 Query 5774 ACCGGTGCTGAATATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCC 5833 || |||||||| || || || ||||||||| ||||| ||||| | | || | |||| Sbjct 32343 ACTGGTGCTGAGTAAGCAACTGCAATCCATGGACGCATACCTAAACGGAAAGATAATTCC 32402 Query 5834 CATTGGCGTCCCAAGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTAT 5893 || | || |||| ||||| ||| || | | ||| || | |||| |||||||| Sbjct 32403 CACTCACGACCCATGTAAGAACAGATTCCTAAGAAGAAATGACAAACGATAAGTTGGTAA 32462 Query 5894 GGTCCTCCATTGTAAAGCCATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAGTGT 5953 || || || ||||| | |||||| || ||| ||||||||||| || || ||||| ||| Sbjct 32463 GGACCACCGTTGTATAACCATTCGTCAAGAGAAGCTGCTTCCCAAATAGGGTAGAAATGT 32522 Query 5954 AACCCAATTGCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGT 6013 || || |||||||| || | || | || || || || |||||||||||||| || | Sbjct 32523 AAACCGATTGCGTTAGAAGTAGGAATAATAGCACCAGAAATGATGTTGTTTCCGTATAAA 32582 Query 6014 AGAGATCCTGCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAAT 6073 || || || | || || ||||| || || ||||| || || || ||||| || | || Sbjct 32583 AGTGAACCAGAAACTGGCTCACGGATACCATCGATATCAACAGGAGGTGCTGCGATAAAA 32642 Query 6074 GCTAATATAAATGCAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCAC 6133 || | ||||| | | |||||| ||||| | | || |||||||| ||||||||||| Sbjct 32643 GCGATGATAAACACTGAAGTTGCAGTTAATAAAGTAGGAATCATTAATACACCAAACCAA 32702 Query 6134 CCCACATAGAGGCGGTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177 || | || | ||||| | |||||||||||||| ||||| || Sbjct 32703 CCGATGTATAAACGGTTTTCAGTGCTAGTAACCCACTCACAAAA 32746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152643074229600