Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq2029 374 1e-98 >seq2029 Length=64692 Score = 374 bits (414), Expect = 1e-98 Identities = 376/487 (77%), Gaps = 6/487 (1%) Strand=Plus/Minus Query 162539 TCGGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGC---TTCA 162595 |||||||||| ||||| || ||||| ||| || | | | ||||||| || | Sbjct 32706 TCGGTTGGTTTGGTGTATTAATGATTCCTACTTTATT---AACTGCAACTTCAGTGTTTA 32650 Query 162596 TCATTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAG 162655 |||| || || || ||||||||||| |||||||||||||||||| | || || ||| | | Sbjct 32649 TCATCGCTTTTATCGCAGCACCTCCTGTTGATATCGATGGTATCCGTGAGCCAGTTTCTG 32590 Query 162656 GTTCACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTA 162715 |||||||| | || || ||||||||||| ||||||||| | |||||| ||| || || | Sbjct 32589 GTTCACTTTTATACGGAAACAACATCATTTCTGGTGCTATTATTCCTACTTCTAACGCAA 32530 Query 162716 TTGGTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATG 162775 | ||| | || ||||| ||||| ||||||||||| ||||||| || ||||| || || | Sbjct 32529 TCGGTTTACATTTCTACCCTATTTGGGAAGCAGCTTCTCTTGACGAATGGTTATACAACG 32470 Query 162776 GTGGACCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGTGGTC 162835 |||| |||| ||||||| | || | || ||| | | |||||| | ||| |||| Sbjct 32469 GTGGTCCTTACCAACTTATCGTTTGTCATTTCTTCTTAGGAATCTGTTCTTACATGGGTC 32410 Query 162836 GTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTG 162895 || |||||||| | |||| ||| |||||||||||||| ||||| ||||| ||||| | Sbjct 32409 GTGAGTGGGAATTATCTTTCCGTTTAGGTATGCGTCCATGGATTGCAGTTGCTTACTCAG 32350 Query 162896 CACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCT 162955 ||||||| |||||||| ||||| ||| | |||| || |||||||||||||||||| Sbjct 32349 CACCAGTTGCTGCAGCAACAGCTGTATTCATCATCTACCCAATCGGTCAAGGTTCTTTCT 32290 Query 162956 CTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAG 163015 |||| | |||||| | |||||||||||||| ||||||| |||| |||| |||||||| | Sbjct 32289 CTGATGGTATGCCTTTAGGTATTTCTGGTACATTTAACTTCATGATCGTATTCCAAGCTG 32230 Query 163016 AGCACAA 163022 |||| || Sbjct 32229 AGCATAA 32223 Score = 369 bits (408), Expect = 4e-97 Identities = 351/449 (78%), Gaps = 0/449 (0%) Strand=Plus/Minus Query 163021 AACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTC 163080 ||||| ||||||||||| ||||||||| | || || || |||||||| ||||||||| | Sbjct 31300 AACATTCTAATGCACCCATTCCATATGCTAGGCGTTGCCGGTGTATTTGGTGGTTCATTA 31241 Query 163081 TTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAA 163140 || ||||||||||||||| ||||| ||||||||||| || | ||||| |||||| | Sbjct 31240 TTCTCTGCTATGCACGGTTCACTTGTAACTTCTTCTCTAATTCGTGAAACAACTGAGAAC 31181 Query 163141 GAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCT 163200 || ||| ||| | ||||| || ||||| ||||||||||| ||||||||||| ||||| Sbjct 31180 GAATCAGCTAACGAAGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCA 31121 Query 163201 GCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCA 163260 |||||||| ||||| ||||| || || ||||| || || ||||| |||||||| |||||| Sbjct 31120 GCTCATGGCTACTTCGGTCGTTTAATTTTCCAATACGCTTCTTTTAACAACTCTCGTTCA 31061 Query 163261 CTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTG 163320 | || |||||| | ||||| | || || || | || ||||| ||||| | ||| | Sbjct 31060 TTACATTTCTTCTTAGCTGCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGTATT 31001 Query 163321 TCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGACGCAGGT 163380 ||||||||||| |||||| | || |||||||||||||||||||| || || || || Sbjct 31000 TCAACTATGGCTTTCAACTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAA 30941 Query 163381 GGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTT 163440 || || ||| |||||||| || || | ||| | || |||||||||||||| Sbjct 30940 GGCCGTGTTATTAACACTTGGGCTGACATTATCAACCGTGCCAACCTTGGTATGGAAGTA 30881 Query 163441 ATGCACGAGCGTAATGCTCACAACTTCCC 163469 ||||| |||||||| |||||||||||||| Sbjct 30880 ATGCATGAGCGTAACGCTCACAACTTCCC 30852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553059911184000