Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= NC_019444.1 Length=176043 Score E Sequences producing significant alignments: (Bits) Value seq2029 536 1e-147 >seq2029 Length=64692 Score = 536 bits (594), Expect = 1e-147 Identities = 727/1008 (72%), Gaps = 4/1008 (0%) Strand=Plus/Minus Query 164619 GATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGGTGGTCTGGATTACTACTTCTT 164678 |||||||||||| || || || || |||||||| || ||||| || ||||| || || Sbjct 63366 GATGACTGGCTTCGTCGCGACCGTTTCGTTTTTGTAGGATGGTCAGGGTTACTT-TTATT 63308 Query 164679 CCC-ACTGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTTG 164737 ||| ||||| ||||| || |||| |||||| |||| || || | ||||| || ||| Sbjct 63307 CCCGACTGCATATCTTGCACTTGGTGGTTGGTTTACAGGAACTACATTTGTAACTTCTTG 63248 Query 164738 GTACACCCATGGTCTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTCACAGCAGCTGT 164797 ||| || |||||| | ||| |||| ||| | ||||| ||| || | || || || || Sbjct 63247 GTATACTCATGGTTTAGCTACTTCATATTTAGAAGGCTGTAATTTCTTAACTGCTGCGGT 63188 Query 164798 CTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCA 164857 || || || || || ||||||||||||| | | | |||||||| || || |||| Sbjct 63187 TTCTACTCCAGCAAATAGTATGGGTCATTCTTTATTATTTCTTTGGGGCCCAGAAGCTCA 63128 Query 164858 GGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCACGG 164917 || |||| || |||||||||||||| || || |||| |||||| || || ||||| Sbjct 63127 AGGTGATTTTACTCGTTGGTGCCAACTTGGAGGTCTTTGGACTTTCGTAGCCCTTCACGG 63068 Query 164918 TGCCTTCGCCCTAATTGGTTTCATGCTCCGCCAGTTTGAGCTGGCACGTCTCATTGGTA- 164976 | | || | || |||||||| ||||| || || ||||| | || ||| ||| | | Sbjct 63067 TTCTTTTTCACTGATTGGTTTTATGCTTCGTCAATTTGAAATTGCTCGT-TCAGTAAAAA 63009 Query 164977 TCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCC 165036 | ||||| || || || ||||| || |||| ||| ||| ||||||| || || |||| Sbjct 63008 TTCGTCCATATAACGCGATTGCTTTTTCTGCTCCAATTTCTGTTTTCGTTTCTGTGTTCC 62949 Query 165037 TTATCTACCCACTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAA 165096 | || |||||| | ||||| || ||||||| || || || ||||| || || |||| Sbjct 62948 TAATTTACCCATTAGGTCAATCAGGTTGGTTCTTTGCACCAAGTTTTGGTGTTGCGGCAA 62889 Query 165097 TCTTTAGATTCCTGTTGTTCCTTCAAGGATTCCACAACTGGACCCTCAACCCCTTCCATA 165156 | || | || | || || ||||||| ||||| |||||||| | ||||| ||||||| Sbjct 62888 TTTTCCGTTTTATCTTATTTTTTCAAGGCTTCCATAACTGGACTTTAAACCCTTTCCATA 62829 Query 165157 TGATGGGTGTTGCAGGTATCTTGGGAGGAGCATTGCTATCTGCTATTCATGGAGTCACAG 165216 |||||||||| || ||| | | |||| || || || | || |||||||| | || | Sbjct 62828 TGATGGGTGTAGCTGGTGTACTAGGAGCTGCGTTACTTTGCGCCATTCATGGTGCTACTG 62769 Query 165217 TTGAAAATACATTATACGAGGATGGAGAGCAGGCAAATACCTTTAAGGCGTTTGATTCGA 165276 | ||||| ||| | | || ||||| || ||||| || || |||||| | | | Sbjct 62768 TAGAAAACACACTTTTTGAAGATGGTGATGGTGCAAACACATTCCGTGCGTTTAACCCAA 62709 Query 165277 CACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCG 165336 | || | |||||| || || |||||||| ||||| ||| | || ||||| || ||||| | Sbjct 62708 CTCAAGCAGAAGAAACATACTCTATGGTAACTGCTAACAGATTTTGGTCTCAAATCTTTG 62649 Query 165337 GCATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGG 165396 | | || |||||||| || || ||| | || || || ||| | ||||| ||||| | | Sbjct 62648 GTGTAGCTTTTTCTAATAAACGTTGGTTACACTTCTTTATGCTTTTTGTTCCTGTAACAG 62589 Query 165397 GTCTTTGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATT 165456 | ||||||| ||||||| | | ||||| ||| | ||| | ||||||||||||| Sbjct 62588 GGCTTTGGATGAGTGCTATTGGTGTAGTAGGTCTAGCTTTAAACTTACGTGCTTACGATT 62529 Query 165457 TCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAA 165516 |||| || || || | || |||||||||||||||||||| || ||||| ||||||| Sbjct 62528 TCGTTTCACAAGAAATTCGCGCTGCAGAAGATCCAGAATTTGAAACTTTCTATACCAAAA 62469 Query 165517 ACATCCTATTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCCCATGAAA 165576 | ||||| || || ||||| | ||||||||| |||| || ||||| || ||||||| Sbjct 62468 ATATCCTTTTAAACGAAGGTATTCGTGCTTGGATGGCTGCTCAAGATCAGCCTCATGAAA 62409 Query 165577 ACTTTATCTTCCCAGAAGAAGTATTGCCTAGAGGCAACGCCCTTTAAT 165624 | || | ||||| || || || || || | || ||||| ||||||| Sbjct 62408 AACTTGTATTCCCTGAGGAGGTTTTACCACGTGGAAACGCTCTTTAAT 62361 Score = 351 bits (388), Expect = 1e-91 Identities = 395/526 (75%), Gaps = 2/526 (0%) Strand=Plus/Minus Query 162891 TTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 162950 ||| || |||||||| ||| || | ||||| | || |||||||||| || ||| | Sbjct 32747 TTTTTGTGAGTGGGTTACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTATT 32688 Query 162951 GATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 163009 |||||||| ||| | || | |||||| || || || ||| |||| || |||| || | Sbjct 32687 AATGATTCCTACTTTATTAACTGCAACT-TCAGTGTTTATCATCGCTTTTATCGCAGCAC 32629 Query 163010 CCCCTGTGGACATTGACGGCATCCGTGAGCCCGTCGCTGGTTCACTCATGTATGGCAACA 163069 | ||||| || || || || ||||||||||| || |||||||||| | || || |||| Sbjct 32628 CTCCTGTTGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCACTTTTATACGGAAACA 32569 Query 163070 ACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCA 163129 ||||||| |||||||| || |||| |||| |||||||| ||| | || ||||| || | Sbjct 32568 ACATCATTTCTGGTGCTATTATTCCTACTTCTAACGCAATCGGTTTACATTTCTACCCTA 32509 Query 163130 TCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAG 163189 | |||||||| || || ||||| || ||| | || ||||||||||||| |||||| | | Sbjct 32508 TTTGGGAAGCAGCTTCTCTTGACGAATGGTTATACAACGGTGGTCCTTACCAACTTATCG 32449 Query 163190 TCTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAATGGGAACTTTCATATC 163249 | | ||| ||| | | || |||| | | || ||||| ||||| |||||| | || | | Sbjct 32448 TTTGTCATTTCTTCTTAGGAATCTGTTCTTACATGGGTCGTGAGTGGGAATTATCTTTCC 32389 Query 163250 GCTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCACCTGTTGCAGCAGCATCCG 163309 | ||||||||||| || ||||| || || ||||| ||||| ||||| |||||| | | Sbjct 32388 GTTTAGGTATGCGTCCATGGATTGCAGTTGCTTACTCAGCACCAGTTGCTGCAGCAACAG 32329 Query 163310 CAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCA 163369 | || ||| | |||| || |||||||||||||||||||||| | ||||| | || | Sbjct 32328 CTGTATTCATCATCTACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTA 32269 Query 163370 TCTCTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAA 163415 | ||||| ||||| |||| |||| | || |||||||| ||||| || Sbjct 32268 TTTCTGGTACATTTAACTTCATGATCGTATTCCAAGCTGAGCATAA 32223 Score = 320 bits (354), Expect = 2e-82 Identities = 353/470 (75%), Gaps = 0/470 (0%) Strand=Plus/Minus Query 163414 AACATCCTGATGCACCCCTTCCATATGTTGGGAGTCGCTGGTGTCTTCGGTGGATCACTC 163473 ||||| || |||||||| ||||||||| | || || || ||||| || ||||| ||| | Sbjct 31300 AACATTCTAATGCACCCATTCCATATGCTAGGCGTTGCCGGTGTATTTGGTGGTTCATTA 31241 Query 163474 TTCTCGGCAATGCATGGCAGTCTTGTTACCTCTTCACTCGTCCGTGAGACGACTGAAACT 163533 ||||| || ||||| || ||||| || ||||| || | ||||| || ||||| | Sbjct 31240 TTCTCTGCTATGCACGGTTCACTTGTAACTTCTTCTCTAATTCGTGAAACAACTGAGAAC 31181 Query 163534 GAGTCACAAAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGACATACAACATCGTTGCA 163593 || ||| ||| | |||||||| || |||||||||||||| || ||||||||||||||| Sbjct 31180 GAATCAGCTAACGAAGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCA 31121 Query 163594 GCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAACAGCAGAAGT 163653 || |||||||||||||||||||| || |||||||| || || || |||||| | Sbjct 31120 GCTCATGGCTACTTCGGTCGTTTAATTTTCCAATACGCTTCTTTTAACAACTCTCGTTCA 31061 Query 163654 CTTCACTTCTTCCTGGCAGCATGGCCTGTCGTCGGAATCTGGTTTACTGCACTGGGCGTA 163713 | || |||||| | || || ||||| || || || || ||||||||||| | || | Sbjct 31060 TTACATTTCTTCTTAGCTGCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGTATT 31001 Query 163714 AGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAG 163773 || ||||| |||||| | || ||||||||||||||||| || | | ||| || Sbjct 31000 TCAACTATGGCTTTCAACTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAA 30941 Query 163774 GGTCGTGTGCTCAACACTTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGTATGGAAGTT 163833 || ||||| | ||||||||||| ||| | | ||||| || || ||||||||||| Sbjct 30940 GGCCGTGTTATTAACACTTGGGCTGACATTATCAACCGTGCCAACCTTGGTATGGAAGTA 30881 Query 163834 ATGCATGAGCGTAACGCACACAACTTCCCACTCGATCTTGCTGCTGCTGA 163883 ||||||||||||||||| ||||||||||| | ||| | || | || ||| Sbjct 30880 ATGCATGAGCGTAACGCTCACAACTTCCCGTTAGATTTAGCGGTTGTTGA 30831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563184255568000