Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq538 114 2e-20 seq326 91.5 3e-13 seq3285 89.7 1e-12 >seq538 Length=19016 Score = 114 bits (126), Expect = 2e-20 Identities = 128/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 48122 TAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAG 48181 || |||| ||| |||||||| |||||| ||||||||| || |||||| |||| || Sbjct 16881 TACAGCAGGCATGCAAAGTCTGTGTGCAGGCCTTCGTCACGAGAAATGAGCTCGTTTGAA 16822 Query 48182 AAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCA 48241 ||| ||| || ||||||| ||| | || ||||||||||| || | ||| ||||| Sbjct 16821 AAGGTGAGGCCGGGCATGAGCCCTCGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCG 16762 Query 48242 GAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAA 48292 |||||||||||||||||||| || ||||| | || | |||| |||| Sbjct 16761 GAGAAGAAGATGCCCTCCACGCAAGCAAACGCAATCAGGCGCTCTGAGAAA 16711 >seq326 Length=80286 Score = 91.5 bits (100), Expect = 3e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 213546 GTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCA 213605 |||||||||||| | ||||||||||| |||||| ||||| ||||| ||||||| Sbjct 58612 GTGCACAGGTTGGACGACTTGATGGTGCCCAAGTTCTGCTGGTTGGACTTGCGGTTGGCA 58671 Query 213606 GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAG 213655 || |||||||| |||||| ||||| || ||||| | ||||| | |||| Sbjct 58672 GAGTCCTTGTAAAGCATGAAGGGGTTGCCCGTCTCCACCTGGGCCTCCAG 58721 >seq3285 Length=63365 Score = 89.7 bits (98), Expect = 1e-12 Identities = 196/289 (68%), Gaps = 11/289 (4%) Strand=Plus/Minus Query 48190 ACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAA 48249 ||||||||||| | || || || |||||||| || | |||||||||||||||| Sbjct 18868 ACCAGGCATGAGCTGCCGCTTCTTCAGCCAGAAGATCGAGCAGAAAGAGCCAGAGAAGTG 18809 Query 48250 GATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGA 48309 |||||||||||| |||| | ||| |||| |||| | |||| ||| | || ||| Sbjct 18808 GATGCCCTCCACACACGCGTAGGCGACAAGCCGCTCTGC-AAAGCAGC-TGCTGCTCT-C 18752 Query 48310 GATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCG 48369 ||||| | |||||| | |||||||||| | ||| || || || || | || | Sbjct 18751 TATCCACTTCATCGCCCACTGCGCCTTCTTCTGTACGCAGGGAATGGTGTCCACCGCGTG 18692 Query 48370 GAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTG----AGCAGCTTTGCGT 48425 ||||||| | | | || ||| ||| || | || || |||||| ||| Sbjct 18691 GAAGAGCATGTCCCGCTGCACTGGGTC----ACGGATATACTGCTCCAGCAGCAGGCCGT 18636 Query 48426 ACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGC 48474 ||||||| |||||| ||| || ||| ||||||| | ||||| || Sbjct 18635 ACATCTCGCTGTGCACCGCCTCGATTGCGCTCTGGAAGGCATAGAAAGC 18587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931490881024000